BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZE02FM1.SCF screened BAC_end
         (933 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1728                                                        1449   0.0  

>3x_Contig1728 
          Length = 20685

 Score = 1449 bits (731), Expect = 0.0
 Identities = 793/807 (98%), Gaps = 5/807 (0%)
 Strand = Plus / Plus

                                                                         
Query: 88    tggatgcttcagattaaggaacatttaaatagtaaataggtacttttcagggtgtttatt 147
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10525 tggatgcttcagattaaggaacatttaaatagtaaataggtacttttcagggtgtttatt 10584

                                                                         
Query: 148   ataaatgcatatctataaatgctggatcgagtacgaatgaacgataacagctgttgcagt 207
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10585 ataaatgcatatctataaatgctggatcgagtacgaatgaacgataacagctgttgcagt 10644

                                                                         
Query: 208   ttggatattcatgttttttattaccccagattgtttgatttctaagcataaatccaactc 267
             |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10645 ttggatattcatggatcttattaccccagattgtttgatttctaagcataaatccaactc 10704

                                                                         
Query: 268   ctttaacaaatgccctggaataccatgagcttctgttcctagtaaaatgacagattttga 327
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10705 ctttaacaaatgccctggaataccatgagcttctgttcctagtaaaatgacagattttga 10764

                                                                         
Query: 328   tggaaatttaaattcagaattcagttgaatggaagaatcagtctgctccaatccaattaa 387
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10765 tggaaatttaaattcagaattcagttgaatggaagaatcagtctgctccaatccaattaa 10824

                                                                         
Query: 388   cgtatatccttccaacttctttgcattcatgtaagatattataccatcgacaggaacttc 447
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10825 cgtatatccttccaacttctttgcattcatgtaagatattataccatcgacaggaacttc 10884

                                                                         
Query: 448   ttcaataggcatccagcggtccgctgtaaccgcaacatttttgaattgaggatgctgttt 507
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10885 ttcaataggcatccagcggtccgctgtaaccgcaacatttttgaattgaggatgctgttt 10944

                                                                         
Query: 508   gactctaatatcatgaattgtcatagtaccgacacccaacacgtcacagagtctacaaat 567
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10945 gactctaatatcatgaattgtcatagtaccgacacccaacacgtcacagagtctacaaat 11004

                                                                         
Query: 568   acctccgagattgggtgctttatccactaatgaagctacgacaattaattcagatcgtgc 627
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11005 acctccgagattgggtgctttatccactaatgaagctacgacaattaattcagatcgtgc 11064

                                                                         
Query: 628   aacagactcaatggatttttgattatcgaaatccaagacagcttcccaagcaccactctt 687
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11065 aacagactcaatggatttttgattatcgaaatccaagacagcttcccaagcaccactctt 11124

                                                                         
Query: 688   cgtttgtaggggcgagttttttgctaactcagttgaatttactagattactacttctttt 747
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11125 cgtttgtaggggcgagttttttgctaactcagttgaatttactagattactacttctttt 11184

                                                                         
Query: 748   ggtcaaccatagttcactcttttccgatcctatttcaaa-tcaccgtcatcgatgttaat 806
             |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 11185 ggtcaaccatagttcactctcttccgatcctatttcaaattcaccgtcatcgatgttaat 11244

                                                                         
Query: 807   ggcttttgaatatcttactatttatattatggaactttattgat-catgattttcattaa 865
             ||| |||||||||||||||||||||| |||||||||||| |||| ||| ||||||| |||
Sbjct: 11245 ggc-tttgaatatcttactatttata-tatggaacttta-tgatccataattttcaataa 11301

                                        
Query: 866   taccccgccaaaattacttgttaactt 892
             ||| ||||||||  |||||||||||||
Sbjct: 11302 tacgccgccaaatatacttgttaactt 11328


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6813
Number of Sequences: 1807
Number of extensions: 6813
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)