BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE02RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1328 0.0
>3x_Contig1728
Length = 20685
Score = 1328 bits (670), Expect = 0.0
Identities = 762/789 (96%), Gaps = 3/789 (0%)
Strand = Plus / Minus
Query: 49 gtttatatattgacggagtgatatacaagtttgtttatggtgcaacagaagtggttacga 108
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 12062 gtttatatattgacggaggattatacaagtttgtttatggtgcaacagaagtggttacga 12003
Query: 109 aatcacgcataattaaagctcttttatattcaagcaaggagtttagacgtcaatttttgc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12002 aatcacgcataattaaagctcttttatattcaagcaaggagtttagacgtcaatttttgc 11943
Query: 169 aggtgatgctccaagaagaccctaacatgttaaaagcgaagaaaaaaactgttggaccag 228
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 11942 aggtgatgctccaagaagaccctaacatgttaaaagcgaagaaaaaaactgatggaccag 11883
Query: 229 aagaaattcaacgattacaaaaatggcaactgtgccttctatcgatcaaatcagtcgata 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11882 aagaaattcaacgattacaaaaatggcaactgtgccttctatcgatcaaatcagtcgata 11823
Query: 289 aagatgttctaacaggtttgtgttctgattatatcattccttctcttgtggaagaatcgt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11822 aagatgttctaacaggtttgtgttctgattatatcattccttctcttgtggaagaatcgt 11763
Query: 349 ctccgttagtaagagtttattcagaatggttcattgcatatgacctatgggttacagcga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11762 ctccgttagtaagagtttattcagaatggttcattgcatatgacctatgggttacagcga 11703
Query: 409 cagataatcataaaaatccaaatgaggactttctgttcaaacttttagaagacacctctc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11702 cagataatcataaaaatccaaatgaggactttctgttcaaacttttagaagacacctctc 11643
Query: 469 gtcctgttttacaagcaagtgttgaacgtttgttattcttatctttgaaggcagcgaagg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11642 gtcctgttttacaagcaagtgttgaacgtttgttattcttatctttgaaggcagcgaagg 11583
Query: 529 agacaggtcattttttcaggccaatggaaagatttgtcgcacaactgataactaattgct 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11582 agacaggtcattttttcaggccaatggaaagatttgtcgcacaactgataactaattgct 11523
Query: 589 cctcanacaaaccattaattagacatttctttaattccctcattctttttgtttggccaa 648
||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 11522 cctcaaacaaaccattaattagacatttctctaattccctcattcttttgttttggccaa 11463
Query: 649 cctttgaagatgacatcaaagataatattttgcgatccattattttttaagctattcagc 708
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct: 11462 cctttgaagatgacatcaaagataatattttgcgatccatta-tttctaagctatacagc 11404
Query: 709 gatgcttagaagatccaagttcaaggtcatttcagagcccgttgacggcaacacttggag 768
|||||| ||||||||||||| |||||||| ||||||| ||| ||||| |||||||||||
Sbjct: 11403 gatgctaagaagatccaagtacaaggtcaattcagag-ccggtgacgcaaacacttggag 11345
Query: 769 catcaataacgaactttagttaacaagtatttttgggcggcgttttttggaaatttttgg 828
|||||||||||| ||| ||||||||||||| ||| |||||||| || | |||| || |||
Sbjct: 11344 catcaataacgaccttaagttaacaagtatattt-ggcggcgtattattgaaaattatgg 11286
Query: 829 atcataaag 837
|||||||||
Sbjct: 11285 atcataaag 11277
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7810
Number of Sequences: 1807
Number of extensions: 7810
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)