BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE03FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1251 1560 0.0
>3x_Contig1251
Length = 6331
Score = 1560 bits (787), Expect = 0.0
Identities = 819/827 (99%), Gaps = 2/827 (0%)
Strand = Plus / Plus
Query: 86 tggactactgccattcgatgggtattatgcatagagacgtcaaaccacacaatgtaatga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4273 tggactactgccattcgatgggtattatgcatagagacgtcaaaccacacaatgtaatga 4332
Query: 146 ttgaccataagcaacacaaattgagactaatcgattggggtttggctgaattttatcatc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4333 ttgaccataagcaacacaaattgagactaatcgattggggtttggctgaattttatcatc 4392
Query: 206 catcgatggaatacaatgtccgcgttgcgtcaagatttttcaagggcccagaacttctag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4393 catcgatggaatacaatgtccgcgttgcgtcaagatttttcaagggcccagaacttctag 4452
Query: 266 ttgattatagaatgtacgattactcgctagacttatggtcatttggagcaatgttagcat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4453 ttgattatagaatgtacgattactcgctagacttatggtcatttggagcaatgttagcat 4512
Query: 326 caatggtttttctgaaagagcctttcttctatgggtcgagtaatactgaccagctagtca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4513 caatggtttttctgaaagagcctttcttctatgggtcgagtaatactgaccagctagtca 4572
Query: 386 agattgtacgcgtcttgggtagtgatgatttcgaaagatatttacagaaatatcagataa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4573 agattgtacgcgtcttgggtagtgatgatttcgaaagatatttacagaaatatcagataa 4632
Query: 446 cactcccagatgagtttattgatatggatcaatacatcagaagaccatggcagaaattcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4633 cactcccagatgagtttattgatatggatcaatacatcagaagaccatggcagaaattcg 4692
Query: 506 tcaatgattccaacaagcacctatgtggaaacgatgatatcattgatttaatcgataatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4693 tcaatgattccaacaagcacctatgtggaaacgatgatatcattgatttaatcgataatc 4752
Query: 566 ttcttcgttacgaccatcaagaaagattttcttgtaaagaagctatggctcatccatggt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4753 ttcttcgttacgaccatcaagaaagattttcttgtaaagaagctatggctcatccatggt 4812
Query: 626 ttgctccaattagaaacaacgaatacacattataaccgttccatagatcaatatttttat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4813 ttgctccaattagaaacaacgaatacacattataaccgttccatagatcaatatttttat 4872
Query: 686 gaagttaataataataataatactaataacaactgtgtgagctttcctataataagtgtt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4873 gaagttaataataataataatactaataacaactgtgtgagctttcctataataagtgtt 4932
Query: 746 ggaggatatattttgatcgggtgcttctaaatctacgaatttattattgacattccattg 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4933 ggaggatatattttgatcgggtgcttctaaatctacgaatttattattgacatt-cattg 4991
Query: 806 a-aaagttttcagatgttggggaactgttttgatcctgaagctgagcccaatcaagcatt 864
| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 4992 agaaagttttcagatgttgtggaactgttttgatcctgaagctgagcccagtcaagcatt 5051
Query: 865 ttgaaatctgcaatgaacgtttggtctttcaacatcaataactcact 911
| || |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5052 tgaaattctgcaatgaacgttttgtctttcaacatcaataactcact 5098
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7944
Number of Sequences: 1807
Number of extensions: 7944
Number of successful extensions: 303
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)