BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZE03RM1.SCF screened BAC_end
         (887 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1474                                                        1340   0.0  

>3x_Contig1474 
          Length = 10584

 Score = 1340 bits (676), Expect = 0.0
 Identities = 763/781 (97%), Gaps = 10/781 (1%)
 Strand = Plus / Minus

                                                                        
Query: 43   gcttttatccagttgataccattctccaaatatcattttgtagatttttcttgttctcac 102
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 8049 gcttttatccagttgatac-attctccaaatatcattttgtagatttttcttgttctcac 7991

                                                                        
Query: 103  tgtcgacagcgttgatctctttatccgttgaagccttgttaaacaatggacatgagaaaa 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7990 tgtcgacagcgttgatctctttatccgttgaagccttgttaaacaatggacatgagaaaa 7931

                                                                        
Query: 163  acccggaaaatctatccaatgccggatataaattctcatgatttaaatgaaaattgttat 222
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 7930 acccggaaaatctatccaatgccggatataaattctcatgatttaaatgaaaatagtaat 7871

                                                                        
Query: 223  tggtgttttgtgatccggtgtaagcattcgaggagccgccatgcttggacaaaaacgaag 282
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7870 tggtgttttgtgatccggtgtaagcattcgaggagccgccatggttggacaaaaacgaag 7811

                                                                        
Query: 283  aatagtcgttttcatcaggatatttttcgttccccatgaacaaaagatgttcgcaaaaat 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7810 aatagtcgttttcatcaggatatttttcgttccccatgaacaaaagatgttcgcaaaaat 7751

                                                                        
Query: 343  gcgccaaccctggcaaatgttccggatcctggaaagatccgatattgacatccaacgcag 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7750 gcgccaaccctggcaaatgttccggatcctggaaagatccgatattgacatccaacgcag 7691

                                                                        
Query: 403  cggcagctttatctgcttcagcatctgaaatcaataaagcttttaaattattaggcaact 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7690 cggcagctttatctgcttcagcatctgaaatcaataaagcttttaaattattaggcaact 7631

                                                                        
Query: 463  ggatgtacctgtacttccgatcgtctaaatctggctttaaaaactcggaatctgtcccta 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7630 ggatgtacctgtacttccgatcgtctaaatctggctttaaaaactcggaatctgtcccta 7571

                                                                        
Query: 523  aggtcctgtatttattagacattttcgtattataatgcaaaaaacggtatctcgatgtta 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7570 aggtcctgtatttattagacattttcgtattataatgcaaaaaacggtatctcgatgtta 7511

                                                                        
Query: 583  gcaaacaactgacagatatctttgaagccaatagggacgtcggttgagataatattccct 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7510 gcaaacaactgacagatatctttgaagccaatagggacgtcggttgagataatattccct 7451

                                                                        
Query: 643  tgaccgctgctagcatcagtttctagaactagtattattccaaatgaataaccgctggna 702
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7450 gaaccgctgctagcatcagtttctagaactagtattattccaaatgaataaccgctggaa 7391

                                                                        
Query: 703  atcccctt-aaactgtatgtgtgttcaaaagtgttc-aaaanaaaaagcc-ttgatttaa 759
            |||||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct: 7390 atccccttaaaactgtatgtgtgttcaaaagtgttcaaaaaaaaaaagcctttgatttaa 7331

                                                                        
Query: 760  t-cgaag-aaaaatatc-aaaccttt-aaatctgtatgtt--ccaaatctggatattctt 813
            | ||||| ||||||||| |||||||| |||||||||||||  | ||||||||||||||||
Sbjct: 7330 tccgaagaaaaaatatcaaaacctttaaaatctgtatgtttccaaaatctggatattctt 7271

             
Query: 814  t 814
            |
Sbjct: 7270 t 7270


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6975
Number of Sequences: 1807
Number of extensions: 6975
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)