BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE04FM1.SCF screened BAC_end
(857 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1358 422 e-118
>3x_Contig1358
Length = 7912
Score = 422 bits (213), Expect = e-118
Identities = 266/277 (96%), Gaps = 5/277 (1%)
Strand = Plus / Minus
Query: 72 ctaatgggtactctttgaaaaatgtcgtttcagctatgacagcgtgaattatgcaacaga 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ctaatgggtactctttgaaaaatgtcgtttcagctatgacagcgtgaattatgcaacaga 856
Query: 132 aaatatcttgatcgttgctgtcatcactgtccctcaacttacgcaagatgtcaacaatat 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 aaatatcttgatcgttgctgtcatcactgtccctcaacttacgcaagatgtcaacaatat 796
Query: 192 ctttgatagccatttccttgttatacatcttctgaagatatgtttgcattttcttttcaa 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ctttgatagccatttccttgttatacatcttctgaagatatgtttgcattttcttttcaa 736
Query: 252 catcctgtggaataggaaccatggtccccaatttccgacgatggcgattcttatgaccat 311
|||||||||||||||| | |||||||||| |||| |||||||||| || | ||||||||
Sbjct: 735 catcctgtggaatagg-agcatggtcccc-atttgcgacgatggc-atcatcatgaccat 679
Query: 312 ttccataaattgatcaatcttggaaaagctgattaga 348
||||| |||||||||||||||| |||||||||||||
Sbjct: 678 atccat-aattgatcaatcttgg-aaagctgattaga 644
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,476
Number of Sequences: 1807
Number of extensions: 19476
Number of successful extensions: 219
Number of sequences better than 1.0e-20: 1
length of query: 857
length of database: 10,358,551
effective HSP length: 16
effective length of query: 841
effective length of database: 10,329,639
effective search space: 8687226399
effective search space used: 8687226399
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)