BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE04RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1651 783 0.0
3x_Contig1782 389 e-108
3x_Contig869 131 3e-30
3x_Contig1717 127 4e-29
3x_Contig278 103 6e-22
>3x_Contig1651
Length = 13087
Score = 783 bits (395), Expect = 0.0
Identities = 412/415 (99%), Gaps = 2/415 (0%)
Strand = Plus / Plus
Query: 44 gcttttcaaggccgaactaatctatatcagatgtgtttttataagatgaaaggattgcag 103
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12667 gcttttcaag-ccgaactaatctatatcagatgtgtttttataagatgaaaggattgcag 12725
Query: 104 aggactaatacgttgaaattaaggttcttaaaaaaacagattggagatttacgtgtcatc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12726 aggactaatacgttgaaattaaggttcttaaaaaaacagattggagatttacgtgtcatc 12785
Query: 164 ataagtttgaatagaattacggaatattaaaaacatctaaaccagtaccactcaccatta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 12786 ataagtttgaatagaattacggaatattaaaaacatctaaaccagtaccactcaccacta 12845
Query: 224 taattcccagaaaagtgattatttggtgttgcattggagaagacacacattttgtttccg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12846 taattcccagaaaagtgattatttggtgttgcattggagaagacacacattttgtttccg 12905
Query: 284 acggt-catatatctattacagtaccttggtagttaataagaggagaaactaaaaaaaga 342
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12906 acggtgcatatatctattacagtaccttggtagttaataagaggagaaactaaaaaaaga 12965
Query: 343 ggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12966 ggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactac 13025
Query: 403 actatagaaccgaaattcttacgaaggcgccaaaaaacactggtttcaaattgcg 457
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13026 actatagaaccgaaattcttacgaaggcgccaaaaaacactggtttcaaattgcg 13080
>3x_Contig1782
Length = 24703
Score = 389 bits (196), Expect = e-108
Identities = 235/244 (96%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 458 ggcagtagcatgtcttcagccaactgccctctctcattcacaaaattaggttcgcatatt 517
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 24703 ggcagtagcatgtcttcagccaactgcgttctctcattcacaaaattaggttcgcatatt 24644
Query: 518 caccacacatagatcc-aacaaatgggaaattaaattgtagcctttgtagcttgttaaat 576
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643 caccacacatagatcccaacaaatgggaaattaaattgtagcctttgtagcttgttaaat 24584
Query: 577 ctaaaataacgttacctcttttctttccattattattcagacattttcatttaaataatt 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24583 ctaaaataacgttacctcttttctttccattattattcagacattttcatttaaataatt 24524
Query: 637 gcttgctttatttttaattgtt-aatgtcccaactaactcacaaatgttcttattcacaa 695
||| ||||| ||||||||||| ||||||| |||||||||||||||||||| ||||||||
Sbjct: 24523 gctgtcttta-ttttaattgttaaatgtccaaactaactcacaaatgttctaattcacaa 24465
Query: 696 agca 699
||||
Sbjct: 24464 agca 24461
>3x_Contig869
Length = 2873
Score = 131 bits (66), Expect = 3e-30
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 342 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 401
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 1064
Query: 402 cactatagaaccga 415
||||||| ||||||
Sbjct: 1065 cactatacaaccga 1078
>3x_Contig1717
Length = 18389
Score = 127 bits (64), Expect = 4e-29
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 342 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 401
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 1708
Query: 402 cactatagaacc 413
||||||| ||||
Sbjct: 1707 cactatacaacc 1696
>3x_Contig278
Length = 1114
Score = 103 bits (52), Expect = 6e-22
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 342 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataacc 397
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataacc 1048
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7611
Number of Sequences: 1807
Number of extensions: 7611
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 5
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)