BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE05FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1747 1594 0.0
3x_Contig1718 248 2e-65
3x_Contig844 168 1e-41
3x_Contig1088 155 2e-37
3x_Contig1468 153 8e-37
3x_Contig1051 151 3e-36
3x_Contig939 151 3e-36
3x_Contig1204 147 5e-35
3x_Contig631 145 2e-34
3x_Contig1376 143 7e-34
3x_Contig727 143 7e-34
3x_Contig582 143 7e-34
>3x_Contig1747
Length = 15671
Score = 1594 bits (804), Expect = 0.0
Identities = 835/844 (98%), Gaps = 1/844 (0%)
Strand = Plus / Minus
Query: 86 taaaaaaaaaaattataacgaaagactgaatactgattaaattgaacatggaatagatat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3067 taaaaaaaaaaattataacgaaagactgaatactgattaaattgaacatggaatagatat 3008
Query: 146 cgagatagaaattgaacagatactaaatgtctgatgttcactatttctaaatgatgtttc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3007 cgagatagaaattgaacagatactaaatgtctgatgttcactatttctaaatgatgtttc 2948
Query: 206 aactgcaggtggccctaatttctgacatgcgaatgtcaagatatgacataacgtccagca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2947 aactgcaggtggccctaatttctgacatgcgaatgtcaagatatgacataacgtccagca 2888
Query: 266 gcacctgcacgctacactcttcctttttcagtaacggtagtttaaattcattttatgtag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2887 gcacctgcacgctacactcttcctttttcagtaacggtagtttaaattcattttatgtag 2828
Query: 326 acagaatatagagatgagagagaataaataaaaggtttgcgtcaaggtgaaaagagggga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2827 acagaatatagagatgagagagaataaataaaaggtttgcgtcaaggtgaaaagagggga 2768
Query: 386 ggagcagtctttgcatgtgggggatctgaacccatgtgtgtaatggttttaaattgaaga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2767 ggagcagtctttgcatgtgggggatctgaacccatgtgtgtaatggttttaaattgaaga 2708
Query: 446 ttgtgccttattataaccatcaaaatttccttttttttccccctgcctggcatgcctttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2707 ttgtgccttattataaccatcaaaatttccttttttttccccctgcctggcatgcctttt 2648
Query: 506 tgagttgtaataataagggaaacggaagcatgtggtgagcatccttgcatgcaccatcaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2647 tgagttgtaataataagggaaacggaagcatgtggtgagcatccttgcatgcaccatcaa 2588
Query: 566 attatgtttttttcaaacatccaaattaatatgctcgcgtggcgtaatggcaacgcgtct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2587 attatgtttttttcaaacatccaaattaatatgctcgcgtggcgtaatggcaacgcgtct 2528
Query: 626 gacttctaatcagaagattgtgggttcgacccccaccgtgagtgctttctttggatttta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2527 gacttctaatcagaagattgtgggttcgacccccaccgtgagtgctttctttggatttta 2468
Query: 686 ccacatccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2467 ccacatccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttc 2408
Query: 746 aattccccgtcgcggagaa-ttttatttttttgaccctagctgtcgttacatcacgtgac 804
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2407 aattccccgtcgcggagaatttttatttttttgaccctagctgtcgttacatcacgtgac 2348
Query: 805 tttccgccaatgataccatgtaatacataacaagtccgggttagaccgctttattttcac 864
|||||||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||
Sbjct: 2347 tttccgccaatgataccatggaatacataacaagtccgggtaagaccgctatattctcac 2288
Query: 865 agaaatcaaaaatttatggctggactcctttatgatgatccatttaatggcgttccatct 924
||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||||
Sbjct: 2287 agaaatcaaaaatttattgctggactcgtatatgatgatccatataatggcgttccatct 2228
Query: 925 tcaa 928
||||
Sbjct: 2227 tcaa 2224
>3x_Contig1718
Length = 19496
Score = 248 bits (125), Expect = 2e-65
Identities = 155/166 (93%), Gaps = 8/166 (4%)
Strand = Plus / Minus
Query: 598 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4417 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 4358
Query: 658 ccaccgtgagtgctttctttggattttaccacatccgcgatagtttaatggttagaattc 717
|||||||||||||||| ||| | | ||||||||||||||||||||||||||||
Sbjct: 4357 ccaccgtgagtgctttattt--------caaaatccgcgatagtttaatggttagaattc 4306
Query: 718 gcgcttgtcgcgtgcgagatcggggttcaattccccgtcgcggaga 763
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4305 gcgcttgtcgcgtgcgagatcggggttcaattccccgtcgcggaga 4260
>3x_Contig844
Length = 2953
Score = 168 bits (85), Expect = 1e-41
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 589 aattaatatgctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 aattaatatgctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgg 1629
Query: 649 gttcgacccccaccgtgagtgcttt 673
|||||||||||||||||||||||||
Sbjct: 1630 gttcgacccccaccgtgagtgcttt 1654
>3x_Contig1088
Length = 4585
Score = 155 bits (78), Expect = 2e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 691 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 1499
Query: 751 cccgtcgcggagaatttt 768
||||||||||||||||||
Sbjct: 1500 cccgtcgcggagaatttt 1517
>3x_Contig1468
Length = 9852
Score = 153 bits (77), Expect = 8e-37
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 597 tgctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgacc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8710 tgctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgacc 8651
Query: 657 cccaccgtgagtgcttt 673
|||||||||||||||||
Sbjct: 8650 cccaccgtgagtgcttt 8634
>3x_Contig1051
Length = 4315
Score = 151 bits (76), Expect = 3e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 598 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3903 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 3962
Query: 658 ccaccgtgagtgcttt 673
||||||||||||||||
Sbjct: 3963 ccaccgtgagtgcttt 3978
>3x_Contig939
Length = 3877
Score = 151 bits (76), Expect = 3e-36
Identities = 79/80 (98%)
Strand = Plus / Minus
Query: 598 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 2150
Query: 658 ccaccgtgagtgctttcttt 677
|||||||||||| |||||||
Sbjct: 2149 ccaccgtgagtgttttcttt 2130
>3x_Contig1204
Length = 5869
Score = 147 bits (74), Expect = 5e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 691 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5718 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 5777
Query: 751 cccgtcgcggagaa 764
||||||||||||||
Sbjct: 5778 cccgtcgcggagaa 5791
>3x_Contig631
Length = 2339
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 690 atccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaatt 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 atccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaatt 1022
Query: 750 ccccgtcgcggag 762
|||||||||||||
Sbjct: 1021 ccccgtcgcggag 1009
>3x_Contig1376
Length = 7449
Score = 143 bits (72), Expect = 7e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 691 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6411 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 6470
Query: 751 cccgtcgcggag 762
||||||||||||
Sbjct: 6471 cccgtcgcggag 6482
>3x_Contig727
Length = 2486
Score = 143 bits (72), Expect = 7e-34
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 691 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1173 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 1114
Query: 751 cccgtcgcggag 762
||||||||||||
Sbjct: 1113 cccgtcgcggag 1102
>3x_Contig582
Length = 2827
Score = 143 bits (72), Expect = 7e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 691 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 1773
Query: 751 cccgtcgcggag 762
||||||||||||
Sbjct: 1774 cccgtcgcggag 1785
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,299
Number of Sequences: 1807
Number of extensions: 12299
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 12
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)