BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE05RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1272 1057 0.0
>3x_Contig1272
Length = 8315
Score = 1057 bits (533), Expect = 0.0
Identities = 551/557 (98%)
Strand = Plus / Plus
Query: 56 ctttaccaaatgtaaatgaaggtttagatgactcagccggtttttcagaggttgttgagg 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3484 ctttaccaaatgtaaatgaaggtttagatgactcagccggtttttcagaggttgttgagg 3543
Query: 116 taccgaatgtgaaagaaggctttttagcttcatcattactgttttccttgcccatagctc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3544 taccgaatgtgaaagaaggctttttagcttcatcattactgttttccttgcccatagctc 3603
Query: 176 caaatgtaaaggaaggctttgatgaatctttgttttcagttgctgtcctttgcactggag 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3604 caaatgtaaaggaaggctttgatgaatctttgttttcagttgctgtcctttgcactggag 3663
Query: 236 cagagaagctaaacgatggtttagagtccgccgatggagcaggggcagagaatgtaccga 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3664 cagagaagctaaacgatggtttagagtccgccgatggagcaggggcagagaatgtaccga 3723
Query: 296 aggtgctagctggctttgcttcttcctttttattttcactttctttggccaaatctttat 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3724 aggtgctagctggctttgcttcttcctttttattttcactttctttggccaaatctttat 3783
Query: 356 tgttgctgaaagaaaatgagaacggagatgatgaattaccattatcagccttatttgacc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3784 tgttgctgaaagaaaatgagaacggagatgatgaattaccattatcagccttatttgacc 3843
Query: 416 caaaggcaggaagagctggtttgcttccctcatttctctctatggatggtgcggacgcag 475
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3844 caaaggcaggaagagctggtttgcttccctcatttttctctatggatggtgcggacgcag 3903
Query: 476 aaggagggaatgttggtttagattgtgaagagttcccaaatatactagctggcttgttat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3904 aaggagggaatgttggtttagattgtgaagagttcccaaatatactagctggcttgttat 3963
Query: 536 ccgttggttttacagctggttcagatttctatgtccttgaaacattattctttggtaaag 595
||||||||||| ||||||||||||||| || |||||||||| ||| ||||||||||||||
Sbjct: 3964 ccgttggtttttcagctggttcagattcctctgtccttgaagcatcattctttggtaaag 4023
Query: 596 taaaggcactggacgat 612
|||||||||||||||||
Sbjct: 4024 taaaggcactggacgat 4040
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,093
Number of Sequences: 1807
Number of extensions: 11093
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)