BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE06FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1505 0.0
>3x_Contig1617
Length = 15119
Score = 1505 bits (759), Expect = 0.0
Identities = 811/821 (98%), Gaps = 6/821 (0%)
Strand = Plus / Minus
Query: 87 tgggcaacggtagtaatgcttttcggtgttctttttaggaacagtatcgttacacacttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3017 tgggcaacggtagtaatgcttttcggtgttctttttaggaacagtatcgttacacacttc 2958
Query: 147 acaattaaatgttaccatcttctttgagcagtttatgtttgggtacggtatgcgttcaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2957 acaattaaatgttaccatcttctttgagcagtttatgtttgggtacggtatgcgttcaac 2898
Query: 207 taggatattccgatgctagaatataagtcatttatctgtataatcattctatattatctc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 taggatattccgatgctagaatataagtcatttatctgtataatcattctatattatctc 2838
Query: 267 atctcatctcatctcatcaccgaagattcttttcactttttaacatcagcagaaaaagaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2837 atctcatctcatctcatcaccgaagattcttttcactttttaacatcagcagaaaaagaa 2778
Query: 327 aagtccacagcgtgtatgaatttaaacttatttatggggagcacattaacaatgtaagga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2777 aagtccacagcgtgtatgaatttaaacttatttatggggagcacattaacaatgtaagga 2718
Query: 387 aatatgtgtaattccatgaaaagtcccaataatttgaatgttgaaagctctttgaacacg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2717 aatatgtgtaattccatgaaaagtcccaataatttgaatgttgaaagctctttgaacacg 2658
Query: 447 gttaagattctaaattagttacgaatgcttgcaaatgttttggctaacacccacaattta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2657 gttaagattctaaattagttacgaatgcttgcaaatgttttggctaacacccacaattta 2598
Query: 507 ggaaggtatcgcatagacatagtcacgtgatacaaattccacacatgtattttcttatga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2597 ggaaggtatcgcatagacatagtcacgtgatacaaattccacacatgtattttcttatga 2538
Query: 567 aacgacactcaaatgggcaactgaccgtcagttagcgacaattgattgtccttatacata 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2537 aacgacactcaaatgggcaactgaccgtcagttagcgacaattgattgtccttatacata 2478
Query: 627 gcttcgttgtatagtttgtttgaaaagccttaatccgtcctcccccccattttctgtgat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2477 gcttcgttgtatagtttgtttgaaaagccttaatccgtcctcccccccattttctgtgat 2418
Query: 687 attttcttgccgaaata-gattctaatgctccactcaatatgcaacttcggtgataactg 745
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 attttcttgccgaaataggattctaatgctccactcaatatgcaacttcggtgataactg 2358
Query: 746 ctaagtgacaagtttcggacatttttatttacatcttgcgtcataaaggccana-gaacg 804
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 2357 ctaagtgacaagtttcggacatttttatttacatcttgcgtcataaaggccaaaggaacg 2298
Query: 805 gggaaaagccaa-ttaacagcttc-aaatcgnatacaagttctttttgcagtgga-aaaa 861
|||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct: 2297 gggaaaagccaatttaacagcttcaaaatcggatacaagttctttttgcagtggagaaaa 2238
Query: 862 agta-tagatggtttcgaataaccaatttcgtctgttaccc 901
|||| ||||||||||||||||||||| ||||||||| ||||
Sbjct: 2237 agtagtagatggtttcgaataaccaagttcgtctgtaaccc 2197
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7528
Number of Sequences: 1807
Number of extensions: 7528
Number of successful extensions: 516
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)