BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE07FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig514 1051 0.0
3x_Contig854 311 1e-84
>3x_Contig514
Length = 1844
Score = 1051 bits (530), Expect = 0.0
Identities = 530/530 (100%)
Strand = Plus / Minus
Query: 87 acaaggatgaatgcgaactgatatgggacatagaccatgactcccaaagaaataaaacat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 acaaggatgaatgcgaactgatatgggacatagaccatgactcccaaagaaataaaacat 474
Query: 147 actcccagtaattgcctgttattaaaaagtagtttatgatgtgtcatatcgttaagagga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 actcccagtaattgcctgttattaaaaagtagtttatgatgtgtcatatcgttaagagga 414
Query: 207 tcaggaaatgtgatacgcgtatatcttgtgattgctgaggaaattttaataactgcaaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tcaggaaatgtgatacgcgtatatcttgtgattgctgaggaaattttaataactgcaaat 354
Query: 267 tcgatgacatttatgagtctcaaaataatgaataataatgcgacagagattatgaaaaag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcgatgacatttatgagtctcaaaataatgaataataatgcgacagagattatgaaaaag 294
Query: 327 actggtccaatccaccacacaaatgtttcacgtagacccagcatatagttattgttcaac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 actggtccaatccaccacacaaatgtttcacgtagacccagcatatagttattgttcaac 234
Query: 387 atatgagaatcgctacttggtttgctcaaagaaatagggtctaagtaatgcagcaaggtc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 atatgagaatcgctacttggtttgctcaaagaaatagggtctaagtaatgcagcaaggtc 174
Query: 447 aatatggccttatgattgattgctatcggtcctactgataaaaagaggaatattaataga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 aatatggccttatgattgattgctatcggtcctactgataaaaagaggaatattaataga 114
Query: 507 ctatgattattcaaaacattcatcaaaccagtatcaaagctgatgaatttactatcaggg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ctatgattattcaaaacattcatcaaaccagtatcaaagctgatgaatttactatcaggg 54
Query: 567 ctgtcatagtagtaaaactggtagcataagactaaagcaattatcgatat 616
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 ctgtcatagtagtaaaactggtagcataagactaaagcaattatcgatat 4
>3x_Contig854
Length = 3006
Score = 311 bits (157), Expect = 1e-84
Identities = 240/261 (91%), Gaps = 5/261 (1%)
Strand = Plus / Plus
Query: 589 agcataagactaaagcaattatcgatattggaattgatgcaaaagctaatctgaatctga 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 agcataagactaaagcaattatcgatattggaattgatgcaaaagctaatctgaatctga 70
Query: 649 tataaagcatcttcaatgttagtttccagtttatggatagtcttaaagaaatttcctctc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tataaagcatcttcaatgttagtttccagtttatggatagtcttaaagaaatttcctctc 130
Query: 709 caggtgggatgaaagaacatcaaatttaatgacttggctatgggtatactccagtggcat 768
||||||||||| |||||||||||||||||||||||| |||| ||||| || ||||| |
Sbjct: 131 caggtgggatg-aagaacatcaaatttaatgacttgtctat-ggtatcatcaagtggta- 187
Query: 769 tgaaggcagaattattgtccattatgatttcatgaaaacctggaggcagccatataatgc 828
|||||| ||| |||||| ||| ||||||||||| || || |||||||||| ||||
Sbjct: 188 tgaagggagatatattgtgcatattgatttcatgagaa-cttgaggcagcca-ataaatg 245
Query: 829 ccatttggtttcatatggatt 849
|||||||||||||||||||||
Sbjct: 246 ccatttggtttcatatggatt 266
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7098
Number of Sequences: 1807
Number of extensions: 7098
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)