BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE07RM1.SCF screened BAC_end
(1122 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1308 500 e-141
>3x_Contig1308
Length = 5728
Score = 500 bits (252), Expect = e-141
Identities = 303/320 (94%)
Strand = Plus / Minus
Query: 41 gcttctactgcctttacacgttcttgccgcaccaacgctaccctgctcaatctttcttgt 100
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5121 gcttctactgcctttacacgttctggccgcaccaacgctaccctgctcaatctttcttgt 5062
Query: 101 gcattggaatccaaaatctgattcaatatcgcttgtgtttgaccatcattcgatccgttg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5061 gcattggaatccaaaatctgattcaatatcgcttgtgtttgaccatcattcgatccgttg 5002
Query: 161 tttgctgattctgatgttcctccactttgttgcttcaattccctcaatctggttttttta 220
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 5001 tttgctgattctgatgttcctccactttgttgcttcaattccctcaatctggcctctcta 4942
Query: 221 atggctctcaattcgtcgcacatggttgcttctattattttaatgtgactggtgacgcct 280
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4941 atggctctcaattcgtcgtccatggttgcttctattattttaatgtgactggtgacgcct 4882
Query: 281 cagcctgtttccgtatctatatacattttgattcctttatcattgatattactgttttgt 340
||||||||| ||||| ||||||||||||||||||| ||||||||||||| ||| | |||
Sbjct: 4881 cagcctgttcccgtaactatatacattttgattccattatcattgatatagctggtatgt 4822
Query: 341 ttatactacttctactatcg 360
||||| ||||| |||||||
Sbjct: 4821 gtatacgacttcaactatcg 4802
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,375
Number of Sequences: 1807
Number of extensions: 13375
Number of successful extensions: 134
Number of sequences better than 1.0e-20: 1
length of query: 1122
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1106
effective length of database: 10,329,639
effective search space: 11424580734
effective search space used: 11424580734
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)