BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE09FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1513 0.0
>3x_Contig1791
Length = 39945
Score = 1513 bits (763), Expect = 0.0
Identities = 805/811 (99%), Gaps = 6/811 (0%)
Strand = Plus / Minus
Query: 87 aaccatgctcttgtaaaaaaaacgggatagtaaagactgatattctgataagcacccaac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16153 aaccatgctcttgtaaaaaaaacgggatagtaaagactgatattctgataagcacccaac 16094
Query: 147 catgagccaatattttattaacaccatgtcatcaatcaaaccaacagcacatttactatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16093 catgagccaatattttattaacaccatgtcatcaatcaaaccaacagcacatttactatt 16034
Query: 207 ctattctttcgtgtacgtatcaaaactttcaatttctactcataatcgtagattgcatca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16033 ctattctttcgtgtacgtatcaaaactttcaatttctactcataatcgtagattgcatca 15974
Query: 267 gtcgtcatccgatttactaacaaaatacttataatcacaacccaactagtttcggtggta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15973 gtcgtcatccgatttactaacaaaatacttataatcacaacccaactagtttcggtggta 15914
Query: 327 ctacattctactcttatgtggcctcgccaattgcattcaaaaaactagaacgggatcaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15913 ctacattctactcttatgtggcctcgccaattgcattcaaaaaactagaacgggatcaat 15854
Query: 387 tttccatcttgcagcataacgttttcccaatgttcttccaaatgcaagcaatttctccga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15853 tttccatcttgcagcataacgttttcccaatgttcttccaaatgcaagcaatttctccga 15794
Query: 447 tcattcttgggttaactgcaccaatcgcccttaccaccggagccattacctctctagtag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15793 tcattcttgggttaactgcaccaatcgcccttaccaccggagccattacctctctagtag 15734
Query: 507 ctgcatccatcagtggtgccgttaactattttgtcttgttgccagtaactcaggggatca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15733 ctgcatccatcagtggtgccgttaactattttgtcttgttgccagtaactcaggggatca 15674
Query: 567 aggaagagagaaagaaggtcgccaaggaatattctggtgacgaattggaattgaaagacg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15673 aggaagagagaaagaaggtcgccaaggaatattctggtgacgaattggaattgaaagacg 15614
Query: 627 caccgttacgtaagagtttcggccaaagtcacggattaagtttgttgttgaatatgacca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15613 caccgttacgtaagagtttcggccaaagtcacggattaagtttgttgttgaatatgacca 15554
Query: 687 atgtcttggggaccttggcttacggtatctatttatcgaa-gggattttcaaatacatcc 745
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 15553 atgtcttggggaccttggcttacggtatctatttatcgaaggggattttcaaatacatcc 15494
Query: 746 ctaaatgattgatgtatagttgcaaacattgaatgataggaataatgagtttttttatat 805
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 15493 ctaaatgattgatgtatagttgcaaacattgaatgataggaataatgag-ttttttatat 15435
Query: 806 cacacataaagatgtacacacatacatacatatatacagnaagaagtatgagtttgatgg 865
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 15434 cacacataaagatgtacacacatacatacatatatacag-aagaagtatgag-ttgat-g 15378
Query: 866 gatcgaagagttgaaaagttgatggaataag 896
|||||||||| ||||||||||||||||||||
Sbjct: 15377 gatcgaagag-tgaaaagttgatggaataag 15348
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6853
Number of Sequences: 1807
Number of extensions: 6853
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)