BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZE10FM1.SCF screened BAC_end
         (941 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1758                                                        1172   0.0  

>3x_Contig1758 
          Length = 25930

 Score = 1172 bits (591), Expect = 0.0
 Identities = 687/707 (97%), Gaps = 9/707 (1%)
 Strand = Plus / Minus

                                                                        
Query: 70   tcttatccttatcgtggtggttattaaaccgtggatacctacaatacaagagtatcattg 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7479 tcttatccttatcgtggtggttattaaaccgtggatacctacaatacaagagtatcattg 7420

                                                                        
Query: 130  aacaattggtgaaagaagagttccaaaattcgaacccaagagatatcatgacaatggatg 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7419 aacaattggtgaaagaagagttccaaaattcgaacccaagagatatcatgacaatggatg 7360

                                                                        
Query: 190  agttcagtggcaagataagcaagatattcgtcaccacaaacaagcaattctttcaacagc 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7359 agttcagtggcaagataagcaagatattcgtcaccacaaacaagcaattctttcaacagc 7300

                                                                        
Query: 250  cacaatcgaatgaaatgttcatttcatgtctacttcctgaacctaacttagagagatttg 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7299 cacaatcgaatgaaatgttcatttcatgtctacttcctgaacctaacttagagagatttg 7240

                                                                        
Query: 310  ttcttcaacaaactttagaacaagatgctttgaaagtactatacgaggataatctattac 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239 ttcttcaacaaactttagaacaagatgctttgaaagtactatacgaggataatctattac 7180

                                                                        
Query: 370  taaaacaacttgtacaagagaccaacaaatgcctacaatcacctggaacatggattgtcc 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7179 taaaacaacttgtacaagagaccaacaaatgcctacaatcacctggaacatggattgtcc 7120

                                                                        
Query: 430  tggagtctttaatcgatgaaacattccacacaatcatggaacaaatcgaggataatgtca 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7119 tggagtctttaatcgatgaaacattccacacaatcatggaacaaatcgaggataatgtca 7060

                                                                        
Query: 490  acagcaaatcgaaacctaaatcgaatgatgacgacaccaaagtagtcgatatatccaaaa 549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7059 acagcaaatcgaaacctaaatcgaatgatgacgacaccaaagtagtcgatatatccaaaa 7000

                                                                        
Query: 550  attcatatcaaatcgcattattctcttatc-ccacgaaagactgcacaaacgaaatgttg 608
            ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 6999 attcatatcaaatcgcattattctc-tatcgccacgaaagactgcacaaacgaaatgttg 6941

                                                                        
Query: 609  aaagcgggactcgtatcaatgaacaacaagtttctacagaaactacacttccttctcggc 668
            |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct: 6940 aaagcgggactcgtatcaatgaacaacaagttcctacagaaactacac-tccatctcggc 6882

                                                                        
Query: 669  acttgacgattctcagtgcctggcttttatagtaacttcggtccattaaaacctttactt 728
            ||||||||| ||||||||| | || | |||||||||||||||| || |||||| ||||||
Sbjct: 6881 acttgacga-tctcagtgcat-gcgtatatagtaacttcggtctatgaaaacc-ttactt 6825

                                                           
Query: 729  ggcccctcattccaagtacggaaaatcgctccattaccgggtatgta 775
            |||||  |||| ||||||| | ||||||||||| ||||| |||||||
Sbjct: 6824 ggccctccatt-caagtactg-aaatcgctcca-taccgtgtatgta 6781


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7653
Number of Sequences: 1807
Number of extensions: 7653
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)