BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE10RM1.SCF screened BAC_end
(1001 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig787 862 0.0
>3x_Contig787
Length = 1880
Score = 862 bits (435), Expect = 0.0
Identities = 504/523 (96%), Gaps = 3/523 (0%)
Strand = Plus / Minus
Query: 53 ttagtcgaagttaaaccatacttagtcattcttcgtcgtaatcatcataatcatcgtaaa 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ttagtcgaagttaaaccatacttagtcattcttcgtcgtaatcatcataatcatcgtaaa 762
Query: 113 agcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggtagtc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggtagtc 702
Query: 173 aaataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttaggggag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aaataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttaggggag 642
Query: 233 ggatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtgtggg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtgtggg 582
Query: 293 tgtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgtgtgt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgtgtgt 522
Query: 353 gggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaacctttt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaacctttt 462
Query: 413 ccaattgatcatcacttggcttaaaagaaatagaattggccgtggaaccttgtcatacca 472
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||
Sbjct: 461 ccaattgatcatcacttggcttagaagaaatagaattggccgtggaacc-tgtcatagca 403
Query: 473 gcaactttttccgtttggtcaactctttcgatttta-aattccaatgaggagaagattaa 531
||||||| |||||||||||||||||||||||| | | | ||| |||||||||| ||| ||
Sbjct: 402 gcaacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggataaa 343
Query: 532 tttttttggaaactttttgtgaccgacaattcccaagacaaaa 574
| | | ||| ||||| | ||||||||||| | |||||||||||
Sbjct: 342 tctctgtgg-aacttctcgtgaccgacaaataccaagacaaaa 301
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9587
Number of Sequences: 1807
Number of extensions: 9587
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 1001
length of database: 10,358,551
effective HSP length: 16
effective length of query: 985
effective length of database: 10,329,639
effective search space: 10174694415
effective search space used: 10174694415
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)