BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE11FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1448 1386 0.0
>3x_Contig1448
Length = 10333
Score = 1386 bits (699), Expect = 0.0
Identities = 751/763 (98%), Gaps = 4/763 (0%)
Strand = Plus / Plus
Query: 85 aaggtacgcatcgatatcgggcacctggtatgcaatccctgggatcatatcgacatactc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9266 aaggtacgcatcgatatcgggcacctggtatgcaatccctgggatcatatcgacatactc 9325
Query: 145 atcagatatatattcgactgaatcgatttcaatcactccagggtataaaggacagaactg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9326 atcagatatatattcgactgaatcgatttcaatcactccagggtataaaggacagaactg 9385
Query: 205 tttccaatctgaatcacagggatcaatctgtctgttaataatattgaatccgtatgcgta 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9386 tttccaatctgaatcacagggatcaatctgtctgttaataatattgaatccgtatgcgta 9445
Query: 265 cacctcagcatgagcaatgacgtacccattgatatcggtagttatatccaaagtataacg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9446 cacctcagcatgagcaatgacgtacccattgatatcggtagttatatccaaagtataacg 9505
Query: 325 caatgatccgtcatccgggttgaagaccacatcaaaactgttagccgttaactcagagtt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9506 caatgatccgtcatccgggttgaagaccacatcaaaactgttagccgttaactcagagtt 9565
Query: 385 atccatacatgataccaacgaggtagcaatcaaactacgtctagcaaacacatttgatac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9566 atccatacatgataccaacgaggtagcaatcaaactacgtctagcaaacacatttgatac 9625
Query: 445 aagaagggacaaaagcacccacagccttattaccatgttcatcttcaaaagagaaagctt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9626 aagaagggacaaaagcacccacagccttattaccatgttcatcttcaaaagagaaagctt 9685
Query: 505 agctggaaaaaagtataagttatcaagcgttcaacactttctaaccaactaaatgaataa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9686 agctggaaaaaagtataagttatcaagcgttcaacactttctaaccaactaaatgaataa 9745
Query: 565 taagggcttcttttcctttactaattcagaagtcagatcaaatcaaaataagcacagtat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9746 taagggcttcttttcctttactaattcagaagtcagatcaaatcaaaataagcacagtat 9805
Query: 625 ttcccacggaccgaaattaaaatcctgatctattttcctttattaacgctttttcaccga 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9806 ttcccacggaccgaaattaaaatcctgatctattttcctttattaacgctttttcaccga 9865
Query: 685 cagacgtgagggtaggttattctttgtttaaaatttgataagcccttcgcccatttgcca 744
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9866 cagacgtgaggttaggttattctttgtttaaaatttgataagcccttcgcccatttgcca 9925
Query: 745 gctagccaattatttgccaggttatcctccttctttctgcttcccttgaataaggtnctg 804
||||||||||||||||||| ||||||| |||| ||||||||||||||| || || |||
Sbjct: 9926 gctagccaattatttgcca-gttatccctcttc-ttctgcttcccttgataaatgt-ctg 9982
Query: 805 ttcccttacaaatcaaagtctattttaaaacatcatcccccgg 847
|| ||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 9983 tt-ccttacagatcaaagtctattttaaaacatcatccaccgg 10024
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7386
Number of Sequences: 1807
Number of extensions: 7386
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)