BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE11RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1127 1318 0.0
>3x_Contig1127
Length = 4949
Score = 1318 bits (665), Expect = 0.0
Identities = 728/741 (98%), Gaps = 6/741 (0%)
Strand = Plus / Plus
Query: 49 cttgtgaaaaagataatatatcccaattactcgatccatatgaaagaagaacgaatagca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3153 cttgtgaaaaagataatatatcccaattactcgatccatatgaaagaagaacgaatagca 3212
Query: 109 aggtactggcaggagacaatggactggagaaaggtcatcgttgagctacagcctgattcc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3213 aggtactggcaggagacaatggactggagaaaggtcatcgttgagctacagcctgattcc 3272
Query: 169 cataataacatcattgttcgtcgcaggtttgttaattcattcggttggatagttgtcaat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3273 cataataacatcattgttcgtcgcaggtttgttaattcattcggttggatagttgtcaat 3332
Query: 229 catattgccgatgaacactttggatcgaaggcaatgatagaatgaatgatgactatagta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3333 catattgccgatgaacactttggatcgaaggcaatgatagaatgaatgatgactatagta 3392
Query: 289 ataataatatcattaaaagttcaactgtatataaataaaataaattagtagtctatagat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3393 ataataatatcattaaaagttcaactgtatataaataaaataaattagtagtctatagat 3452
Query: 349 cgcgttctcagaggatacgaggcttcacacctctggtatcttttcctttttgtggttggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3453 cgcgttctcagaggatacgaggcttcacacctctggtatcttttcctttttgtggttggt 3512
Query: 409 ggtttcattcgttactaggatctaagggatcgatcttgagtactttatctggattcaaca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3513 ggtttcattcgttactaggatctaagggatcgatcttgagtactttatctggattcaaca 3572
Query: 469 gtctctttggatctatagctaactttactttccgcattagatcgacagtatctgatccta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3573 gtctctttggatctatagctaactttactttccgcattagatcgacagtatctgatccta 3632
Query: 529 attcatcctccaaaaactttcttttaccagtttcaataccatgctccccagaacacgtac 588
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3633 attcatcctccaaaaactttcttttaccagttccaataccatgctccccagaacacgtac 3692
Query: 589 cttcatttttaagagtaacagcatttgatttcagctaccagctgtttgcaaa-ttcaaac 647
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 3693 cttcatttttaagagtaacagca-ttgatttcagctaccagctgtttgcaaatttcaaac 3751
Query: 648 tgatccggttcatagaaaatttcatagtggatatttccgtccccaacattgacccaaggt 707
|||||||||||||||||||| |||||||||||||| ||||| |||||| |||||||||||
Sbjct: 3752 tgatccggttcatagaaaatatcatagtggatattcccgtcaccaaca-tgacccaaggt 3810
Query: 708 catatgagttagagggtaagcttgctgggattttattccaattcttcgagagtaacttca 767
|||||||||||||||||||| |||||| ||||||| |||||||||||||||||| || ||
Sbjct: 3811 catatgagttagagggtaag-ttgctgtgatttta-tccaattcttcgagagtagctgca 3868
Query: 768 agattgggaaagtggcactgc 788
||||| |||||||||||||||
Sbjct: 3869 agatt-ggaaagtggcactgc 3888
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8677
Number of Sequences: 1807
Number of extensions: 8677
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)