BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE12RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 886 0.0
>3x_Contig1774
Length = 27771
Score = 886 bits (447), Expect = 0.0
Identities = 539/563 (95%), Gaps = 5/563 (0%)
Strand = Plus / Minus
Query: 45 gcttatcaaatgattttgaatatttaaaggtagaccaaaataataataccaaacaaaccc 104
||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct: 16955 gcttatcaaatgatttttaagataaaaaggtagaccaaaataataataccaaacaaaccc 16896
Query: 105 aatcgggactaaataagatcccagtaagactcaccgaaccaacatgtcctcacttgacat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16895 aatcgggactaaataagatcccagtaagactcaccgaaccaacatgtcctcacttgacat 16836
Query: 165 caatgagcaacgtgctcttataaagtctgctcacagatacatctcagagaaactcttgga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 16835 caatgagcaacgtgctcttataaagtctgctcacagatacatctcagagaaactcgagga 16776
Query: 225 tcacttctcatccgagtttttaccaaaggctcttgtgatttgtggatctggtttaagtgg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16775 tcacttctcatccgagtttttaccaaaggctcttgtgatttgtggatctggtttaagtgg 16716
Query: 285 aatctcaaccaagatcgctgatgaaccaaagccattgattctgtcttattcgaccattcc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16715 aatctcaaccaagatcgctgatgaaccaaagccattgattctgtcttattcgaccattcc 16656
Query: 345 tggcttcaaagtcagcaccgtacctggacatagaggtgagtcgatctttgactacatgaa 404
||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct: 16655 tggcttcaaagtcagcaccgtacctggacatagtggtgagttgatctttggctacatgaa 16596
Query: 405 cggtgcgcctgtcgtcttaatgaatggccgtttgcattcttatgagggccattcctttac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 16595 cggtgcgcctgtcgtcttaatgaatggccgtttgcattcttatgagggccattccttagc 16536
Query: 465 agaaacagtgcatgctatccgagcattgcacttgttgggggtcaattcattgtcttgatc 524
||||||||||||| ||||||| |||||||||||||| |||||||| ||| ||||||||||
Sbjct: 16535 agaaacagtgcatcctatccgtgcattgcacttgtt-ggggtcaa-tcaatgtcttgatc 16478
Query: 525 gtaacaaatgcaggccggtggtatcaatgcctccttttaaggctggggacttaaagtgtg 584
|||||||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||
Sbjct: 16477 gtaacaaatgca-gccggtggtatcaatgcctcc-tttaaggctggggatttaatgtgtg 16420
Query: 585 gctaccaaccatattaatttccc 607
||| | ||||||| ||||||||
Sbjct: 16419 tcta-cgaccatatcaatttccc 16398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6414
Number of Sequences: 1807
Number of extensions: 6414
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)