BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF01FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1693 1348 0.0
>3x_Contig1693
Length = 15531
Score = 1348 bits (680), Expect = 0.0
Identities = 733/747 (98%), Gaps = 3/747 (0%)
Strand = Plus / Minus
Query: 87 tctgtccttcttttccctctaatttctgtgtgtgcacaacgtgtaattttataactagat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7756 tctgtccttcttttccctctaatttctgtgtgtgcacaacgtgtaattttataactagat 7697
Query: 147 tgaaattcagccctaaaaaatagtcacaattgccttatactattagtttgctgctgttca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7696 tgaaattcagccctaaaaaatagtcacaattgccttatactattagtttgctgctgttca 7637
Query: 207 atattcacacacgccctttctctctttctctctttctgttcacacgcaatgtatcaaata 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7636 atattcacacacgccctttctctctttctctctttctgttcacacgcaatgtatcaaata 7577
Query: 267 aagttaaaaccccaaaagactcaaaagactcaaaaatatgtacctcttacaatactacca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7576 aagttaaaaccccaaaagactcaaaagactcaaaaatatgtacctcttacaatactacca 7517
Query: 327 gttaaaatatcgttctgtttccgttagagacctctcacttcacttttacctcgctctagg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7516 gttaaaatatcgttctgtttccgttagagacctctcacttcacttttacctcgctctagg 7457
Query: 387 tgatgaaacttatcttaaactagtctaacctaacctaagttaacttaacttatctatctt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7456 tgatgaaacttatcttaaactagtctaacctaacctaagttaacttaacttatctatctt 7397
Query: 447 attttctcttttgccttatcattagccaagtttacaggttttcagagaaaaacaaactca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7396 attttctcttttgccttatcattagccaagtttacaggttttcagagaaaaacaaactca 7337
Query: 507 aattcgaatttcaggaaaagccactgtcaatcaattttcaaaatcgcacacagtggaagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7336 aattcgaatttcaggaaaagccactgtcaatcaattttcaaaatcgcacacagtggaagt 7277
Query: 567 gcggttaacaagctataataaaggcgtgcttgaaaagaaaagagggcgggttcgtgctgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7276 gcggttaacaagctataataaaggcgtgcttgaaaagaaaagagggcgggttcgtgctgg 7217
Query: 627 tgcgcttgtaacgagttgggagtagaatagcaatggtgggaaacaggacgt-actatgaa 685
||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct: 7216 tgcgcttgtaacgagttggaagtagaatagcaatggtggg-aacaggacgtaactatgaa 7158
Query: 686 tagtcagttccttatacgtgaaccgaacgaggttgtcaggttttctgcatcagttggtct 745
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7157 tagtcagttccttatacgtgaaccgaacgaggttgtcaggtttcctgcatcagttggtct 7098
Query: 746 atatctaggtgtgtggctttctgggtgtgcctgtagttggcttgggtattcaattgcagt 805
||||||||||||||| ||||||| ||||| ||||| ||||||| ||||| | |||||||
Sbjct: 7097 atatctaggtgtgtgtctttctgtgtgtgtctgtatgtggcttgtgtatttatttgcagt 7038
Query: 806 gttggtttccagnttttcctatattta 832
| |||||||||| ||||||||||||||
Sbjct: 7037 g-tggtttccaggttttcctatattta 7012
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6139
Number of Sequences: 1807
Number of extensions: 6139
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)