BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF01RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1688 1518 0.0
>3x_Contig1688
Length = 18058
Score = 1518 bits (766), Expect = 0.0
Identities = 845/868 (97%), Gaps = 4/868 (0%)
Strand = Plus / Plus
Query: 48 ttgaaattgatgaatccggtagtgagttgctgcgcaagacatggtacgaaggcgaagaag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11322 ttgaaattgatgaatccggtagtgagttgctgcgcaagacatggtacgaaggcgaagaag 11381
Query: 108 ttgtgctatatcctgccaattatgaaaaggtgtcagtcgtccgcctacaaatcgcgacat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11382 ttgtgctatatcctgccaattatgaaaaggtgtcagtcgtccgcctacaaatcgcgacat 11441
Query: 168 gtttggtattattcgtgatgtttggtatgacggatcaagtgaatggatctttgatgcctg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11442 gtttggtattattcgtgatgtttggtatgacggatcaagtgaatggatctttgatgcctg 11501
Query: 228 ttattactaagtattacaatgtcaccgagcttcaaatgtcgatagtgtttttccttcaat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11502 ttattactaagtattacaatgtcaccgagcttcaaatgtcgatagtgtttttccttcaat 11561
Query: 288 tgatgggctatgtgtcggcatcggtcttaaatgatattttgcataaaaaatgggggtctc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11562 tgatgggctatgtgtcggcatcggtcttaaatgatattttgcataaaaaatgggggtctc 11621
Query: 348 gaggcgtaatgacagcatcatgtatacttgctgcatttacctacttggttcttgccctaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11622 gaggcgtaatgacagcatcatgtatacttgctgcatttacctacttggttcttgccctaa 11681
Query: 408 aaccatattcgctctatctttatgcgatatgcttctttccgctaggtatgtgtgttgggt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11682 aaccatattcgctctatctttatgcgatatgcttctttccgctaggtatgtgtgttgggt 11741
Query: 468 ttgttgactctacaggtaatttctactttggtaatttagagactagaaagaatgaatgga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11742 ttgttgactctacaggtaatttctactttggtaatttagagactagaaagaatgaatgga 11801
Query: 528 tgggtttgcttcatggaatatacgggttggccgctggtgtaaccccaccattagttacaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11802 tgggtttgcttcatggaatatacgggttggccgctggtgtaaccccaccattagttacaa 11861
Query: 588 ccttcgatcattatttggattggtcttatatcttttgggtccctttggtgtttgctcttg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11862 ccttcgatcattatttggattggtcttatatcttttgggtccctttggtgtttgctcttg 11921
Query: 648 tggggttggcactctgcatgggggccttttaatacgaaactgctaccaaatacagataca 707
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 11922 tggggttggcactctgcatgggggcctttaaatacgaaactgctaccaaatacagataca 11981
Query: 708 tctgtgtaggagtccccgatgaatcaggtggttttttaaaattgaggaagagatanattg 767
||||||||||||||||||||||||||||||| | || ||| ||||||||||||| | ||
Sbjct: 11982 tctgtgtaggagtccccgatgaatcaggtgg--tattgaaaatgaggaagagataaaatg 12039
Query: 768 ttaccagttttcgaaatatcctccgatgattttcttggatgcattttttctatttcttta 827
|||||||| ||||| ||||||||||||||||||||| |||||||||| |||| | ||
Sbjct: 12040 gtaccagttatcgaagtatcctccgatgattttcttgtatgcatttttcttattcttgta 12099
Query: 828 cttaagtacagaaatgggtgttgggacatggcttttcacat-tttgttggattataagaa 886
|||| |||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||
Sbjct: 12100 cttaggtacagaaattggtgttgggacatggctattcacatatttgttgaattataagaa 12159
Query: 887 aggtgagaagttccttattgtcatttgt 914
||||||||||||||||| ||||||||||
Sbjct: 12160 aggtgagaagttcctta-tgtcatttgt 12186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6268
Number of Sequences: 1807
Number of extensions: 6268
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)