BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF02FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1493 0.0
>3x_Contig1468
Length = 9852
Score = 1493 bits (753), Expect = 0.0
Identities = 813/827 (98%), Gaps = 5/827 (0%)
Strand = Plus / Minus
Query: 86 tgccgtaatcctttgacatgcaaaataactttggattatctgtcaactctggatttagat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5098 tgccgtaatcctttgacatgcaaaataactttggattatctgtcaactctggatttagat 5039
Query: 146 aaggttcttctaagcatggacccaaaggtgtctgtgttgtctcattggaatggagagcct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5038 aaggttcttctaagcatggacccaaaggtgtctgtgttgtctcattggaatggagagcct 4979
Query: 206 ttcaacggagattttgacaagtacacctcgaaatttttaaactcgccagctatcggatct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4978 ttcaacggagattttgacaagtacacctcgaaatttttaaactcgccagctatcggatct 4919
Query: 266 cttctttattttttgaaatatagaagtcttctaatgcaatttctaagtttgagtgtccat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4918 cttctttattttttgaaatatagaagtcttctaatgcaatttctaagtttgagtgtccat 4859
Query: 326 actttctcctatgcggccaataattcaaaatgtgatgacctcatgaaagctcttgtttct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4858 actttctcctatgcggccaataattcaaaatgtgatgacctcatgaaagctcttgtttct 4799
Query: 386 aacgctatacattcagcgacaatcttttcctttttggatacgttaaacttgaaatctcaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4798 aacgctatacattcagcgacaatcttttcctttttggatacgttaaacttgaaatctcaa 4739
Query: 446 gctccttccactgatccctttaaagacattactattttggaaggcttggatctcagcctg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4738 gctccttccactgatccctttaaagacattactattttggaaggcttggatctcagcctg 4679
Query: 506 gacaaagttgaaaagaattcatcgataaatggatctctttatgatttttcgaacctggat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4678 gacaaagttgaaaagaattcatcgataaatggatctctttatgatttttcgaacctggat 4619
Query: 566 tccctgattgagcttaagaaacggtctgaaacttacctctcgattacatcaggtcatcca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4618 tccctgattgagcttaagaaacggtctgaaacttacctctcgattacatcaggtcatcca 4559
Query: 626 atagatgcccaacagctggaagtcggctctgagaaagagatcgaaataattaagaaaaca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4558 atagatgcccaacagctggaagtcggctctgagaaagagatcgaaataattaagaaaaca 4499
Query: 686 tccaccgccttccttgcctatcaggaattagcaacatttcaactttctggtcttcattca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4498 tccaccgccttccttgcctatcaggaattagcaacatttcaactttctggtcttcattca 4439
Query: 746 tgggtttcaattggggcagataattgttgttgacagtaaactttctccaattcaaagat- 804
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4438 tggg-ttcaattggtgcagataattgttgttgacagtaaactttctccaattcaaagatc 4380
Query: 805 caattttatattggaagtattggaa-tcatta-ncctaaaat-aaccaatatgtcgaatc 861
||||||||||||||||||||| ||| |||||| |||||| | ||| |||||||||||||
Sbjct: 4379 caattttatattggaagtatttgaattcattattcctaaagtaaacgaatatgtcgaatc 4320
Query: 862 tcccctttcatattctgaggaactagttncccttgctggcttccttt 908
|| |||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct: 4319 tcgccttccatattctgaggaactagtttcccttgctgtcttccttt 4273
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7142
Number of Sequences: 1807
Number of extensions: 7142
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)