BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF02RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1320 0.0
>3x_Contig1744
Length = 24119
Score = 1320 bits (666), Expect = 0.0
Identities = 730/742 (98%), Gaps = 7/742 (0%)
Strand = Plus / Minus
Query: 45 ttaagtgct-atttacacaatctcttccatcgccaacgtcagacagccatcaatgggtcc 103
||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 15914 ttaagtgctcatttacacaaac-cttccatcgccaacgtcagacagccatcaatgggtcc 15856
Query: 104 tactttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatgga 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15855 tactttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatgga 15796
Query: 164 tgagttcaacatgcatttaactggtgatattcatgcaatcggtgctgctatttaattttc 223
|||||||||||||||||||||||||||||||||||||||||||||||||| | || || |
Sbjct: 15795 tgagttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaat-aacttac 15737
Query: 224 tagcagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15736 tagcagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgt 15677
Query: 284 tttacaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15676 tttacaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttga 15617
Query: 344 caaggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15616 caaggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaa 15557
Query: 404 ttatcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15556 ttatcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttg 15497
Query: 464 acgtcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15496 acgtcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtt 15437
Query: 524 tcacaaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15436 tcacaaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgt 15377
Query: 584 tgtctaaggacttgaaagatttgagagagcgtgtccgacgtatcgtaattggctct-act 642
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 15376 tgtctaaggacttgaaagatttgagagagcgtgtcggacgtatcgtaattggctctaact 15317
Query: 643 acg-aaaagaacctataactgttaacgacattggatgtgcaggtgccattgctgcacttc 701
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15316 acgaaaaagaacctataactgttaacgacattggatgtgcaggtgccattgctgcacttc 15257
Query: 702 t-aaggatgccgt-aagcctaacctgatgcaaacgcttgaagggacaccagttttggttc 759
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15256 taaaggatgccgtaaagcctaacctgatgcaaacgcttgaagggacaccagttttggttc 15197
Query: 760 atgctggtccatttgcaaacat 781
||||||||||||||||||||||
Sbjct: 15196 atgctggtccatttgcaaacat 15175
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6754
Number of Sequences: 1807
Number of extensions: 6754
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)