BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF03FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 1485 0.0
>3x_Contig1676
Length = 15800
Score = 1485 bits (749), Expect = 0.0
Identities = 805/815 (98%), Gaps = 7/815 (0%)
Strand = Plus / Plus
Query: 89 cttatttcttcaacacaattgataaaactgatc-ataattacctccatattcgtgacatt 147
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5473 cttatttcttcaacacaattgataaaactgatccataattacctccatattcgtgacatt 5532
Query: 148 gttgtttatatctccaatgagagacactttgcagaagaactgtttggcaatcttgattta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5533 gttgtttatatctccaatgagagacactttgcagaagaactgtttggcaatcttgattta 5592
Query: 208 cgcatctttactttgggcaacagaaactatacctttattcgttacatcactcttagttcc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5593 cgcatctttactttgggcaacagaaactatacctttattcgttacatcactcttagttcc 5652
Query: 268 tttattaattgttgttttcccagttttaaaggatacaacggatggacacatactaaaccc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5653 tttattaattgttgttttcccagttttaaaggatacaacggatggacacatactaaaccc 5712
Query: 328 aacagaatcttcccagtatattttgtccacaatgtggtctagtgtgattatgttattact 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5713 aacagaatcttcccagtatattttgtccacaatgtggtctagtgtgattatgttattact 5772
Query: 388 aggtggttttaccttggcagcagcactatctaaatataacattgctaaggttctatcaac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5773 aggtggttttaccttggcagcagcactatctaaatataacattgctaaggttctatcaac 5832
Query: 448 tcacattttgtcgtctgcggggacaaacccaaagattattcttttgacaaatatgggtgt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5833 tcacattttgtcgtctgcggggacaaacccaaagattattcttttgacaaatatgggtgt 5892
Query: 508 ggctttgtttgcatcaatgtgggtatccaatgtagccgcgccggtattgtgttattccat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5893 ggctttgtttgcatcaatgtgggtatccaatgtagccgcgccggtattgtgttattccat 5952
Query: 568 tattcagccattattaagaactttgcctaaaggcagtacatttgcaaaatcattgatttt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5953 tattcagccattattaagaactttgcctaaaggcagtacatttgcaaaatcattgatttt 6012
Query: 628 aggtattgcattggcatccaatattggaggtatggcatcccctattgcttccnctcaaaa 687
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6013 aggtattgcattggcatccaatattggaggtatggcatcccctattgcttcccctcaaaa 6072
Query: 688 catcatttcgataggtatgatggatccgccaccttcatggggccaatggtttattgtatc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6073 catcatttcgataggtatgatggatccgccaccttcatggggccaatggtttattgtatc 6132
Query: 748 attacctgtttgtgtcatttgtatcgttgtcatctggtgtttactacttttgactttccc 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6133 attacctgtttgtgtcatttgtatcgttgtcatctggtgtttactacttttgactttccc 6192
Query: 808 tccgnacagcaa-ttgaaaattttg-aatatcatcccattttcggatccattcactgtgg 865
|||| ||||||| |||||||||||| |||||||| ||| ||||||||||||||||||| |
Sbjct: 6193 tccggacagcaatttgaaaattttgaaatatcat-ccaatttcggatccattcactgt-g 6250
Query: 866 cagcagtggttatatcacgaatcgttaccatactc 900
||||||||| ||||||||| |||||||||||||||
Sbjct: 6251 cagcagtgg-tatatcacg-atcgttaccatactc 6283
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6304
Number of Sequences: 1807
Number of extensions: 6304
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)