BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF03RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1516 0.0
>3x_Contig1630
Length = 14771
Score = 1516 bits (765), Expect = 0.0
Identities = 837/859 (97%), Gaps = 2/859 (0%)
Strand = Plus / Plus
Query: 42 gcttttctctgagcagaattaggtttctttggcttcaataccatcactcttagcacaact 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5368 gcttttctctgagcagaattaggtttctttggcttcaataccatcactcttagcacaact 5427
Query: 102 cctttacgaatcgggcatacctccaaatctggggattcagtgatcttcttacggccagga 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5428 cctttacgaatcgggcatacctccaaatctggggattcagtgatcttcttacggccagga 5487
Query: 162 ggcttgacccctctctttatttggttcaacgtggcttgtattggtgaatttnatgagtta 221
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct: 5488 ggcttgacccctctctttatttggttcaacgtggcttgtattggtgaagtatatgagaaa 5547
Query: 222 gaacgttgttgcagtggtggtgcaaatgctatgcttgaacgaacattacgcaacgatagt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5548 gaacgttgttgcagtggtggtgcaaatgctatgcttgaacgaacattacgcaacgatagt 5607
Query: 282 ctagtcagactactgctcaatccgaaaacctgtttgaacattggtatctttgacaggatt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5608 ctagtcagactactgctcaatccgaaaacctgtttgaacattggtatctttgacaggatt 5667
Query: 342 gtttcttaagatccagtgcacgtaagtcaaactcagagttgaacttacgccaacatttat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5668 gtttcttaagatccagtgcacgtaagtcaaactcagagttgaacttacgccaacatttat 5727
Query: 402 tcactgaccgattgatataactctttcaattcaacatttgcttcataattttttgtcagt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5728 tcactgaccgattgatataactctttcaattcaacatttgcttcataattttttgtcagt 5787
Query: 462 ttctgatgatgaaaaatcatagttgaaaatattcggaagtcatgtgatcgaatatgtgtt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5788 ttctgatgatgaaaaatcatagttgaaaatattcggaagtcatgtgatcgaatatgtgtt 5847
Query: 522 gttgctgatgtccgggaaattgttcagaaaatgtgcatggtttgagagatcttttaacct 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5848 gttgctgatgtccgggaaattgttcagaaaatgtgcatggtttgagagatcttttaacct 5907
Query: 582 aaaagattttgttcatttcgttgggaacaccagctgcactatgcgggttccgaattacga 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5908 aaaagattttgttcatttcgttgggaacaccagctgcactatgcgggttccgaattacga 5967
Query: 642 gaaaagtccttactgaggtagttgttgtatttcctattttgaaatatcaaacaactatac 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5968 gaaaagtccttactgaggtagttgttgtatttcctattttgaaatatcaaacaactatac 6027
Query: 702 tggnattatggacgatcaagctgtaaggtgggtgcaggtaaatagggtgttttgaccaac 761
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6028 tgg-attatggacgatcaagctgtaaggtgggtgcaggtaaatagggtgtttgaaccaac 6086
Query: 762 tacttgaattatgcgtgattagatattgcggngtagtttgacttcccggctcgagttatt 821
||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| |||
Sbjct: 6087 tacttgaattatgcgtgatagaatattgcggggtagtttgacttccgggctcgagtaatt 6146
Query: 822 aagtaggctggtgttaaagcaactgtctatttttttaatttttgtatcacgtgccataag 881
| |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||
Sbjct: 6147 aggtaggctggtgttaaagcgactgtctatttttttagtttttgtatcacgtg-cataag 6205
Query: 882 aacagaatggtttctctcc 900
| |||| | |||||||||
Sbjct: 6206 atcagatagttttctctcc 6224
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6896
Number of Sequences: 1807
Number of extensions: 6896
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)