BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF04RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 1384 0.0
>3x_Contig1676
Length = 15800
Score = 1384 bits (698), Expect = 0.0
Identities = 788/809 (97%), Gaps = 7/809 (0%)
Strand = Plus / Plus
Query: 45 gcttaaagttgagtgagtattttttcattagaaaagagtgagaaaagatacaaagtgaga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12259 gcttaaagttgagtgagtattttttcattagaaaagagtgagaaaagatacaaagtgaga 12318
Query: 105 taccactatgataatgagtaggggctcgaatgcaatcagaatgctgcatcctgtcgattg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12319 taccactatgataatgagtaggggctcgaatgcaatcagaatgctgcatcctgtcgattg 12378
Query: 165 caatgaaggaactggaatgtgtcgtatcatttggggttctacgcaaaagctttaatataa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 12379 caatgaaggaactggaatgtgtcgtatcatttggggttctacgcaaaagctttaagaaaa 12438
Query: 225 caaaggtctcacctttccgtataacaagctcatgtgcgtcacggcagatcacttatctat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12439 caaaggtctcacctttccgtataacaagctcatgtgcgtcacggcagatcacttatctat 12498
Query: 285 cggatccaaagctaaatatggcaaatcctctgcactattaaccgtcacttttgcatcagt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12499 cggatccaaagctaaatatggcaaatcctctgcactattaaccgtcacttttgcatcagt 12558
Query: 345 caggttatgttttcattgaaaagaaactgaaaaattaatgatttctcgttgtatagcaaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12559 caggttatgttttcattgaaaagaaactgaaaaattaatgatttctcgttgtatagcaaa 12618
Query: 405 ataaataggattttgcgaccagccaattttgtatattaacaggagttaccttgagatgcc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12619 ataaataggattttgcgaccagccaattttgtatattaacaggagttaccttgagatgcc 12678
Query: 465 tttttaccattggctagccatcaattcatcccaaacgtagtagttccacctacatgttca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12679 tttttaccattggctagccatcaattcatcccaaacgtagtagttccacctacatgttca 12738
Query: 525 aggaaagattactcaacatcctcaagcatatacgaccaatgagtaccgaaactactgcca 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12739 aggaaagattactcaacatcctcaagcatatacgaccaatgagtaccgaaactactgcca 12798
Query: 585 aatattatccaaaaattgttgagtctgcgcaagcggaccagagcttaaagctaaaccaca 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12799 aatattatccaaaaattgttgagtctgcgcaagcggaccagagcttaaagctaaaccaca 12858
Query: 645 catgtttcagggtaaaggatccanaggtcactgttgcgttcttaccaggacaattttggt 704
||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||
Sbjct: 12859 catgtttcagggtaaaggatccaaaggtcactgttgcgttc-taccaggaacaatttggt 12917
Query: 705 atgaagctattagatcacaagaaattccctgacatgaagtttgatttatactttcttatc 764
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 12918 atgaagctattagatcacaagaaattccctgacatgaagtttgatttatac-ttcttatc 12976
Query: 765 attccctaaataagcagtttttcgaacacctctctaagtggccattgacgttttttagag 824
||||||| ||||||||| |||||||||| ||||| ||| |||||||||| | |||||||
Sbjct: 12977 attccct-aataagcag-ttttcgaacaactctc-aaggtgccattgacg-tctttagag 13032
Query: 825 aacaccgtttttttggatttgacccacaa 853
|| | || | ||||||| |||||||||||
Sbjct: 13033 aa-aacggtattttggaattgacccacaa 13060
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6793
Number of Sequences: 1807
Number of extensions: 6793
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)