BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZF05FM1.SCF screened BAC_end
         (937 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1563                                                        1334   0.0  

>3x_Contig1563 
          Length = 10839

 Score = 1334 bits (673), Expect = 0.0
 Identities = 703/712 (98%), Gaps = 1/712 (0%)
 Strand = Plus / Minus

                                                                        
Query: 168  ccatactagtatctaaacttcacgtttactcgcagtttgatacagcagactccaacagag 227
            |||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct: 5431 ccatactaatatctaaacttcaagtttactcgcagtttgataca-caaactccaacagag 5373

                                                                        
Query: 228  agagcttttccctctatgttcacctccgattctgatataagcgactcaattgactctgat 287
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5372 agagcttttccctctatgttcagctccgattctgatataagcgactcaattgactctgat 5313

                                                                        
Query: 288  gtcggagatcagctaaagagacggtcttcttcaatactgcgcaaaatgtttaataggtca 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5312 gtcggagatcagctaaagagacggtcttcttcaatactgcgcaaaatgtttaataggtca 5253

                                                                        
Query: 348  aagaaactactgccaaaactacacaagaggtgaaacgtatgagcagttgtgctgctggat 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5252 aagaaactactgccaaaactacacaagaggtgaaacgtatgagcagttgtgctgctggat 5193

                                                                        
Query: 408  aatggaggagcttctcttttcatactactccgtcttatatcaaaatttctacgctcactt 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5192 aatggaggagcttctcttttcatactactccgtcttatatcaaaatttctacgctcactt 5133

                                                                        
Query: 468  ctgagcttttcagcagggaaggtagaaaaaaattttgacacattgacgaaaacagattga 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5132 ctgagcttttcagcagggaaggtagaaaaaaattttgacacattgacgaaaacagattga 5073

                                                                        
Query: 528  taacacttaagacctttgataaagctttgaatgacacctactctttgatttcatattgga 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5072 taacacttaagacctttgataaagctttgaatgacacctactctttgatttcatattgga 5013

                                                                        
Query: 588  tttttcactatataagacaactggggtgatatatccagagaaccaattaggtattggaat 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5012 tttttcactatataagacaactggggtgatatatccagagaaccaattaggtattggaat 4953

                                                                        
Query: 648  agtttatacctgattcactgaaagatggctgacgttaagattcaaactctaccaaccgac 707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952 agtttatacctgattcactgaaagatggctgacgttaagattcaaactctaccaaccgac 4893

                                                                        
Query: 708  tttagggccaaccattatgagattgaattgagtgagttagatgctgagcacaattcattt 767
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4892 tttagggccaaccattatgagattgaattgagtgagttagatgctgagcacaattcattt 4833

                                                                        
Query: 768  atcggatccgtgcgtattattatgtccactgttaatgccaatgacatgatttcattgaat 827
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4832 atcggatccgtgcgtattattatgtccactgttaatgccaatgacatgatttcattgaat 4773

                                                                
Query: 828  atnagggacattgagatcgtttctgtcgtggttgaactgaaaaaggggtctg 879
            || ||||||||||||||||||||||  ||||||||||||||| |||||||||
Sbjct: 4772 atgagggacattgagatcgtttctgcggtggttgaactgaaagaggggtctg 4721


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6377
Number of Sequences: 1807
Number of extensions: 6377
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)