BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF06FM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig641 1433 0.0
>3x_Contig641
Length = 2317
Score = 1433 bits (723), Expect = 0.0
Identities = 797/815 (97%), Gaps = 7/815 (0%)
Strand = Plus / Minus
Query: 86 ctggttcaattcatttcttttggtcttgttactggggcttttaccagcctgctagctgtt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 ctggttcaattcatttcttttggtcttgttactggggcttttaccagcctgctagctgtt 1612
Query: 146 tttctgtaggcaaaactgtaaggggcacgtgaaatacgaaatcgtatccctccatgtctc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 tttctgtaggcaaaactgtaaggggcacgtgaaatacgaaatcgtatccctccatgtctc 1552
Query: 206 ttttggcatggtatagggtaccttttcggtcctcataggttttactcaatgatatttcag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 ttttggcatggtatagggtaccttttcggtcctcataggttttactcaatgatatttcag 1492
Query: 266 tgttttgctcagctaatggaatcatgacaaatttaaatgttagcatccatttaagttgaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 tgttttgctcagctaatggaatcatgacaaatttaaatgttagcatccatttaagttgaa 1432
Query: 326 atatgtttgttttaaattgactagtaatgtaagtcgtgggagagcattgaggaataagtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1431 atatgtttgttttaaattgactagtaatgtaagtcgtgggagagcattgaggaataagtt 1372
Query: 386 tcatgcaaatcttatcgcaattatcgaaatttgtagcgtgagtttcgtagactaaagttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 tcatgcaaatcttatcgcaattatcgaaatttgtagcgtgagtttcgtagactaaagttc 1312
Query: 446 ccgaaggcttcttctttgagatattttcatctgacgagaattttggattaatcaactcaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 ccgaaggcttcttctttgagatattttcatctgacgagaattttggattaatcaactcaa 1252
Query: 506 atgtttcgatggatgctgtcacagcagtcactttaaaattggaattatcttctacatttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 atgtttcgatggatgctgtcacagcagtcactttaaaattggaattatcttctacatttt 1192
Query: 566 tcaagtcaagtattatatcgatttgatcggaaacagagtacgctggtttggagagttct- 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 tcaagtcaagtattatatcgatttgatcggaaacagagtacgctggtttggagagttcta 1132
Query: 625 aattacaaatgaacttatcattcatttttacaacatactcagtttgtaatgactgcaact 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1131 aattacaaatgaacttatcattcatttttacaacatactcagtttgtaatgactgcaact 1072
Query: 685 gcgatagtagcgaagaattgctttgcgtctcatcaatagagttctctgggatacctgtaa 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 gcgatagtagcgaagaattgctttgcgtctcatcaatagagttctctgggatacctgtaa 1012
Query: 745 aatanaattgcgacaagttcatccgnactgaggtttgaaggttctggtttcaattgntgt 804
|||| ||||||||||||||||| || ||||||| |||| ||||||| || ||||| |
Sbjct: 1011 aataaaattgcgacaagttcattcggactgagg-ttgagggttctgtttcaaattgt--t 955
Query: 805 ggcctaat-atgaatcaatgggtacgtcggaaacattattttcattccattctgaga-ta 862
|||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| ||
Sbjct: 954 ggcctaataatgaatcaatgggtacgtcggaatcatcattttcattccattctgagacta 895
Query: 863 cctctttaaacttttggtttcatggcttcaatcga 897
| ||||||||||||| |||||||||||||||||||
Sbjct: 894 cgtctttaaactttt-gtttcatggcttcaatcga 861
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6426
Number of Sequences: 1807
Number of extensions: 6426
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)