BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF06RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1005 1639 0.0
>3x_Contig1005
Length = 3979
Score = 1639 bits (827), Expect = 0.0
Identities = 855/865 (98%)
Strand = Plus / Minus
Query: 53 tcatcacaacatacaatagttcatcaattgttatgaaatggagatcaccagagtgatgag 112
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1955 tcatcacaacatacaagagttcatcaattgttatgaaatggagatcaccagagtgatgag 1896
Query: 113 agaaaaccaagaattacggaacattttgaaaaagtttaatgatatctataatgccaagac 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1895 agaaaaccaagaattacggaacattttgaaaaagtttaatgatatctataatgccaagac 1836
Query: 173 caattattacagttatttgcaaagaatttctgactccttggtgcctctatttgaactaaa 232
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1835 caattattacagttatttgcaaagaatttctgactccttggtgcctctatcggaactaaa 1776
Query: 233 tgctactacgagaaataatatcatcaagaaagtgactaggggccacgattatgacgacaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1775 tgctactacgagaaataatatcatcaagaaagtgactaggggccacgattatgacgacaa 1716
Query: 293 ttgcaaagtaataaacaatttagaatccagggtaagatatttggacactttaggtcagtt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1715 ttgcaaagtaataaacaatttagaatccagggtaagatatttggacactttaggtcagtt 1656
Query: 353 gaagactgctatcgccaacggtgaaaatatctcttgtgcagtttgttattccgacattta 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1655 gaagactgctatcgccaacggtgaaaatatctcttgtgcagtttgttattccgacattta 1596
Query: 413 cactggttctatcttgaaatgtggacatttcttctgtaaggactgtgttactcactggtt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1595 cactggttctatcttgaaatgtggacatttcttctgtaaggactgtgttactcactggtt 1536
Query: 473 taaaaagaacacttcatgtccaatgtgcaaaaacagaatgtcaagttccgaagtgtatca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1535 taaaaagaacacttcatgtccaatgtgcaaaaacagaatgtcaagttccgaagtgtatca 1476
Query: 533 cttcaagttccgtgaagaagaattgaaggaagaagatgatactgataacccagagcaagt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1475 cttcaagttccgtgaagaagaattgaaggaagaagatgatactgataacccagagcaagt 1416
Query: 593 gacgaaggacgacgatcaaactaattccagcagtgatgggaacgacaccacacatgagga 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 gacgaaggacgacgatcaaactaattccagcagtgatgggaacgacaccacacatgagga 1356
Query: 653 ggataccgaggctgtaattactaggaaatatactaaattcccacgtttaacagaagttga 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 ggataccgaggctgtaattactaggaaatatactaaattcccacgtttaacagaagttga 1296
Query: 713 taaggtaatgttggataacacatggngtgccaaggtagaccaagtgatgaaattgatatt 772
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1295 taaggtaatgttggataacacatggggtgccaaggtagaccaagtgatgaaattgatatt 1236
Query: 773 gtatataaaacagcaacatttgggagaagaaccgcataagaagaaccctcanatcgtgat 832
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 1235 gtatataaaacagcaacatttggagaaagaaccgcataagaagaaccctcaaatcgtgat 1176
Query: 833 ttttttctcgcactctgcatttttgagtattctctccacactattgaccgctcataacgt 892
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 tttttcctcgcactctgcatttttgagtattctctccacactattgaccgctcataacgt 1116
Query: 893 gacttacgcaaggccactgagaaac 917
|||| ||||||||||||||||||||
Sbjct: 1115 gactcacgcaaggccactgagaaac 1091
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7240
Number of Sequences: 1807
Number of extensions: 7240
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)