BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF07FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1335 1427 0.0
>3x_Contig1335
Length = 8696
Score = 1427 bits (720), Expect = 0.0
Identities = 799/819 (97%), Gaps = 6/819 (0%)
Strand = Plus / Minus
Query: 88 tgcttcatacactgngaaaacttcaaatctttggtacttccctatgccatcaactttggt 147
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8570 tgcttcatacactg-gaaaacttcaaatctttggtacttccctatgccatcaactttggt 8512
Query: 148 ttattccttgcatttttattatacaatcgatcaattacattaggcgataaaagtaaccat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8511 ttattccttgcatttttattatacaatcgatcaattacattaggcgataaaagtaaccat 8452
Query: 208 gttgcaggattgcacatcgtacaatttttctattgcttgatgtttattgctttctttagc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8451 gttgcaggattgcacatcgtacaatttttctattgcttgatgtttattgctttctttagc 8392
Query: 268 gtaccggtatggttttcaaagcaagtcactctatcgtacttgatcaggtttgtcatgaac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8391 gtaccggtatggttttcaaagcaagtcactctatcgtacttgatcaggtttgtcatgaac 8332
Query: 328 cctgtaaagtatctattggagttattggggattatgttgataatacggtacttcacagtg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8331 cctgtaaagtatctattggagttattggggattatgttgataatacggtacttcacagtg 8272
Query: 388 gtacatccattccttctagctgataatcgtcatatcaccttttacctattcaaaaaactg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8271 gtacatccattccttctagctgataatcgtcatatcaccttttacctattcaaaaaactg 8212
Query: 448 atcggaagaagtagtttgttcaagtattgtgtgatggctccaatttatcatttctccgcg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8211 atcggaagaagtagtttgttcaagtattgtgtgatggctccaatttatcatttctccgcg 8152
Query: 508 tatgtctaccttgaagtaatgagacctagcacgatgatattccaccctatattgcctatt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8151 tatgtctaccttgaagtaatgagacctagcacgatgatattccaccctatattgcctatt 8092
Query: 568 gaaa-taaaaacccaatcgatttaccaattcaattgacacatatttcgtggactgccttg 626
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8091 gaaattaaaaacccaatcgatttaccaattcaattgacacatatttcgtggactgccttg 8032
Query: 627 attatgtgcacatttatgacggnggttccttctcccttgntngaacctcgatactacatc 686
|||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||
Sbjct: 8031 attatgtgcacatttatgacggtggttccttctcccttgtttgaacctcgatactacatc 7972
Query: 687 ttgccatgtatattttggaggcttttcatcacaatggcacctgaaccattctggggntat 746
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7971 ttgccatttatattttggaggcttttcatcacaatggcacctgaaccattctggggtaat 7912
Query: 747 ccaataggtaaggtgactggaacgaaatga-acttgtctgaatgtgcatggtttatgat- 804
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 7911 ccaataggtaaggtgactggaacgaaaagacacttgtctgaatgtgcatggtttatgata 7852
Query: 805 attaatttgatcacttat-ttatttttcagagatttgatataaaa-gggaattttaaact 862
|||||||||||||| ||| ||||||| ||||||||||||||||| |||||| | |||||
Sbjct: 7851 attaatttgatcacgtatattattttcaagagatttgatataaaatgggaatctgaaact 7792
Query: 863 actgtacagcatatcatttggtnaagacataaacggaat 901
|||||||||||||||||||||| ||||||||||| ||||
Sbjct: 7791 actgtacagcatatcatttggtaaagacataaacagaat 7753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6319
Number of Sequences: 1807
Number of extensions: 6319
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)