BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZF07RM1.SCF screened BAC_end
         (926 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig717                                                         1080   0.0  

>3x_Contig717 
          Length = 3533

 Score = 1080 bits (545), Expect = 0.0
 Identities = 545/545 (100%)
 Strand = Plus / Plus

                                                                        
Query: 43   gctttgcctcgccttcttatcttccggttattccgtaatatagaagaaaacaaagcgaac 102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2985 gctttgcctcgccttcttatcttccggttattccgtaatatagaagaaaacaaagcgaac 3044

                                                                        
Query: 103  cacagtttaaaacccactaatccaaaaatcagccttgctccatttattttccagcgcttg 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3045 cacagtttaaaacccactaatccaaaaatcagccttgctccatttattttccagcgcttg 3104

                                                                        
Query: 163  tcataatatttcagaactacaaacctgtttacatgccatttatttagcgcaaaattcatt 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3105 tcataatatttcagaactacaaacctgtttacatgccatttatttagcgcaaaattcatt 3164

                                                                        
Query: 223  acgtttattccaatgcatcaattactaccgacaatacatttattggactgatattatata 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3165 acgtttattccaatgcatcaattactaccgacaatacatttattggactgatattatata 3224

                                                                        
Query: 283  ctgtgtaatttgtatgaaccgctatcatctttatggtagcatttaatattttgagaaaaa 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3225 ctgtgtaatttgtatgaaccgctatcatctttatggtagcatttaatattttgagaaaaa 3284

                                                                        
Query: 343  taggtcctaccatattctatcaatgattatgattccattaggatcactcaaatgttggtg 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3285 taggtcctaccatattctatcaatgattatgattccattaggatcactcaaatgttggtg 3344

                                                                        
Query: 403  aaaaattcgtagcgtctttaatgtcaagcgcaccaacgcttttatcgacttgtgtcaggt 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3345 aaaaattcgtagcgtctttaatgtcaagcgcaccaacgcttttatcgacttgtgtcaggt 3404

                                                                        
Query: 463  tttcctgtttggccgcatttcgctgagaatgttccttcgaggatttaaagcctctcatga 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3405 tttcctgtttggccgcatttcgctgagaatgttccttcgaggatttaaagcctctcatga 3464

                                                                        
Query: 523  aaagttatgaaattgatggaaaaaaaaaaaaattgaacatatgccaacctaaaatgattt 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3465 aaagttatgaaattgatggaaaaaaaaaaaaattgaacatatgccaacctaaaatgattt 3524

                 
Query: 583  attta 587
            |||||
Sbjct: 3525 attta 3529


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,228
Number of Sequences: 1807
Number of extensions: 15228
Number of successful extensions: 213
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)