BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF08FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1710 948 0.0
3x_Contig941 375 e-103
>3x_Contig1710
Length = 16151
Score = 948 bits (478), Expect = 0.0
Identities = 595/625 (95%), Gaps = 7/625 (1%)
Strand = Plus / Minus
Query: 300 tagaattaattcaggccctaattcagtgcctcatccgttatcctcaggatccattttgga 359
|||| |||| |||||||| ||| ||||| ||||||||||||||||| | ||||| |||
Sbjct: 16026 tagagttaagtcaggcccaaataaagtgcgtcatccgttatcctcagaagccattaagga 15967
Query: 360 tatcggtggtacgcaaatgatgtttattctaccagatcaaggactttacattgatccgaa 419
|| ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 15966 taacggtgtaacgcaaaaaatgtttattctaccatgacaaggactttacattgatccgaa 15907
Query: 420 tgcggtagcccatttgactccaaagcttttcatggcttattataacgttactacaaatcc 479
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15906 agcg-tagccaatttgactccaaagcttttcatggcttattataacgttactacaaatcc 15848
Query: 480 attgttacgaaaccttttccaatctaatccagatttaattcattcgttggaattatcttc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15847 attgttacgaaaccttttccaatctaatccagatttaattcattcgttggaattatcttc 15788
Query: 540 accctcccgtaatggtcaattaggtgtcagctctcagactcaaatgttgcctcaatcaag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15787 accctcccgtaatggtcaattaggtgtcagctctcagactcaaatgttgcctcaatcaag 15728
Query: 600 ccaatctcatttgcatagccatggcaacggtcagccttcagtgagagctttcaaaatgta 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15727 ccaatctcatttgcatagccatggcaacggtcagccttcagtgagagctttcaaaatgta 15668
Query: 660 cgatgctcctgattctgccatgaggtcacaactgctgtcagaatctacgggacagatgta 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15667 cgatgctcctgattctgccatgaggtcacaactgctgtcagaatctacgggacagatgta 15608
Query: 720 tggttccaacggtgcttctaatggacacggaatgtcacacagtaatggttcctccgacat 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15607 tggttccaacggtgcttctaatggacacggaatgtcacacagtaatggttcctccgacat 15548
Query: 780 gtcgaacggtcaactgtatggtaccatcgcttacacttggattc-acattgctagcacag 838
||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||
Sbjct: 15547 gtcgaacggtcaactgtatggtaccatcgctaacac-tggattcaacattgctagcacag 15489
Query: 839 atgtctctactgatttatctcgtgatgaaaaca-naattttaaa-cacctcatag-tatg 895
||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| ||||
Sbjct: 15488 atgtctctactgatttatctcgtgatgaaaacagaaatattaaaccacctcatagttatg 15429
Query: 896 ctaccatgattac-caagctatctt 919
||||||||||||| |||||||||||
Sbjct: 15428 ctaccatgattacacaagctatctt 15404
>3x_Contig941
Length = 3149
Score = 375 bits (189), Expect = e-103
Identities = 216/221 (97%), Gaps = 3/221 (1%)
Strand = Plus / Minus
Query: 86 atgcgaaaat-cgcgggcaaagactggacttactatttgaaagatatagtgattaacatt 144
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 atgcgaaaattcgcgggcaaagactggacttactatttgaaagatatagtgattaacatt 168
Query: 145 gggaggaacacttctccaggcgatgcttcggtggatatagatttaggtccggcaaaagtt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gggaggaacacttctccaggcgatgcttcggtggatatagatttaggtccggcaaaagtt 108
Query: 205 gtgt-caaggcagcat-gctaccattaaattcaattcaaattctgcactatgggaattac 262
|||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gtgtaaaaggcagaatagctaccattaaattcaattcaaattctgcactatgggaattac 48
Query: 263 atgtcacgggacgtaatggagccaaggtcaatttccataga 303
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 atgtcacgggacgtaatggagccaaggtcaatttccataga 7
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4795
Number of Sequences: 1807
Number of extensions: 4795
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)