BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF09FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1315 1509 0.0
>3x_Contig1315
Length = 8846
Score = 1509 bits (761), Expect = 0.0
Identities = 807/819 (98%), Gaps = 3/819 (0%)
Strand = Plus / Minus
Query: 87 tgatcatttggatttgacttatatacatctctactacgcgaaaggaattattaaaggtaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4940 tgatcatttggatttgacttatatacatctctactacgcgaaaggaattattaaaggtaa 4881
Query: 147 aatacacgcataaacaaaaacaatggcatctagtactgctgcagctggtatgacttcttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4880 aatacacgcataaacaaaaacaatggcatctagtactgctgcagctggtatgacttcttc 4821
Query: 207 ttctgatgggttggctttggtaaatccatcttcttatgttgggtttgattcgattacttc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4820 ttctgatgggttggctttggtaaatccatcttcttatgttgggtttgattcgattacttc 4761
Query: 267 acagattgaacatcgtttgttgaagagaggatttcaattcaacgttatggtcgttggaca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4760 acagattgaacatcgtttgttgaagagaggatttcaattcaacgttatggtcgttggaca 4701
Query: 327 ttctggtctgggtaagagtactttgatcaacactttgtttgcatctcacttggttgattc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4700 ttctggtctgggtaagagtactttgatcaacactttgtttgcatctcacttggttgattc 4641
Query: 387 ttctactggtaaggacatcactcaggaaccaattagtaagaccaccgagatcaaggtttc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4640 ttctactggtaaggacatcactcaggaaccaattagtaagaccaccgagatcaaggtttc 4581
Query: 447 aacacattctttattggaagaccgtgtacgtttgaacgtgaacgtgattgacactccagg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4580 aacacattctttattggaagaccgtgtacgtttgaacgtgaacgtgattgacactccagg 4521
Query: 507 ttttggtgaccagataaataacgacaaagtttgggaacctattgtcaagtacatcaagga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4520 ttttggtgaccagataaataacgacaaagtttgggaacctattgtcaagtacatcaagga 4461
Query: 567 gcaacactctcaatatttacgtaaagagttgactgctcaacgtgaaagacacattgtaga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4460 gcaacactctcaatatttacgtaaagagttgactgctcaacgtgaaagacacattgtaga 4401
Query: 627 cactcgagtacatgcagtgttatatttcatccaacctaacggtaagggtctaacagaact 686
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4400 cactcgagtacatgcagtgttatatttcatccaa-ctaacggtaagggtctaacagaact 4342
Query: 687 tgacgttgctgctttgaagaga-tgacagaaatcgctaatgttatcccggtgatcgctaa 745
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4341 tgacgttgctgctttgaagagattgacagaaatcgctaatgttatcccggtgatcgctaa 4282
Query: 746 agctgatactttgacgttgaatgagagagctaacttcagaaacatcttacaanaaaattt 805
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 4281 agctgatactttgacgttgaatgagagagctaacttcagaaacatcttacaagaagaatt 4222
Query: 806 taaaaagtacaatttcaaaatctatccatatgaatttaaacgatctgaccgatgaagaag 865
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 4221 taaaaagtacaatttcagaatctatccatatg-atttagacgatctgaccgatgaagaag 4163
Query: 866 tggaactgaattaaagnataagaactattatttcatttg 904
||||||||||| |||| |||||| |||||||| ||||||
Sbjct: 4162 tggaactgaataaaagtataagatctattattccatttg 4124
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7176
Number of Sequences: 1807
Number of extensions: 7176
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)