BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZF09RM1.SCF screened BAC_end
         (941 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1097                                                        1285   0.0  

>3x_Contig1097 
          Length = 4271

 Score = 1285 bits (648), Expect = 0.0
 Identities = 720/736 (97%), Gaps = 6/736 (0%)
 Strand = Plus / Minus

                                                                        
Query: 43   gcttttgttgatgcaacaccgttttctggaccagcattgatgtggacaccgcagtgagta 102
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2416 gcttttgttgatgcaacaccgatttctggaccagcattgatgtggacaccgcagtgagta 2357

                                                                        
Query: 103  cttctagaaatggaagaaccaacactgttcacgatacccaaggtcaatgcacctctttcc 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2356 cttctagaaatggaagaaccaacactgttcacgatacccaaggtcaatgcacctctttcc 2297

                                                                        
Query: 163  aaacagtaattcaaggacaacatggtgtcagcagtttcaccggattgggaaacattatat 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||
Sbjct: 2296 aaacagtaattcaaggacaacatggtgtcagcagtttcaccggattgggaaacaaaa-at 2238

                                                                        
Query: 223  acaaacatcgtctctaaagattgggcattttctatccaagaaatctgacgctaattccac 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2237 acaaacatcgtctctaaagattgggcattttctatccaagaaatctgacgctaattccac 2178

                                                                        
Query: 283  tgatactggaatctccgttagctcttcgaaaatggctcttgtagctaaacaagagtgata 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2177 tgatactggaatctccgttagctcttcgaaaatggctcttgtagctaaacaagagtgata 2118

                                                                        
Query: 343  agaagtaccacaggcgatcattattaatctacgagctttcctgatggcagacaatctaga 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2117 agaagtaccacaggcgatcattattaatctacgagctttcctgatggcagacaatctaga 2058

                                                                        
Query: 403  ctttagaccacccaagttgaccagattgtgttcaaaatctattctacctctcatggtgtt 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 ctttagaccacccaagttgaccagattgtgttcaaaatctattctacctctcatggtgtt 1998

                                                                        
Query: 463  caaagtagattctggttgttcataaatttccttttgcatgaaatgttggtatggaccctt 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1997 caaagtagattctggttgttcataaatttccttttgcatgaaatgttggtatggaccctt 1938

                                                                        
Query: 523  cataatttgagccaattccatctcaagggtttgaatggatctggtggcagattctgtcaa 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1937 cataatttgagccaattccatctcaagggtttgaatggatctggtggcagattctgtcaa 1878

                                                                        
Query: 583  ttttttgttagctctatggatgtgcaattcaccgtcgtagatgtgagcaatatcatcgtc 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1877 ttttttgttagctctatggatgtgcaattcaccgtcgtagatgtgagcaatatcatcgtc 1818

                                                                        
Query: 643  ttccaagaacaagacctttttggtgtgtttttacatggaggcagcatcactggaaaggaa 702
            |||||||||||||||||| ||||||||||||   |||||||||||||||||||||||| |
Sbjct: 1817 ttccaagaacaagaccttcttggtgtgttttacaatggaggcagcatcactggaaagg-a 1759

                                                                        
Query: 703  aaaattcgattggagatgggagaaccgtctttttgataagaaaagctcttgatttgagat 762
            ||||||||||||||||| ||||||||||| || ||||||| ||||||||||| |||||||
Sbjct: 1758 aaaattcgattggagat-ggagaaccgtc-ttctgataag-aaagctcttga-ttgagat 1703

                            
Query: 763  ctacgccaagtacttt 778
            |||||| | |||||||
Sbjct: 1702 ctacgcaaggtacttt 1687


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7503
Number of Sequences: 1807
Number of extensions: 7503
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)