BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZF10RM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1190 1108 0.0
>3x_Contig1190
Length = 5329
Score = 1108 bits (559), Expect = 0.0
Identities = 595/603 (98%), Gaps = 3/603 (0%)
Strand = Plus / Plus
Query: 50 aagagttcgacactagaattctagataaggttattgaatacatggaatactcgtataagt 109
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4725 aagagttcgacactagaatactagataaggttattgaatacatggaatactcgtataagt 4784
Query: 110 acaaggatgctgatgacgacgttgaagttcctgagttcaacgtttctcctgatatttcgt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4785 acaaggatgctgatgacgacgttgaagttcctgagttcaacgtttctcctgatatttcgt 4844
Query: 170 tagatttattattagctgctgattatttgggtatatgatgcgatactaaaggctagatag 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4845 tagatttattattagctgctgattatttgggtatatgatgcgatactaaaggctagatag 4904
Query: 230 aacaaaacacagggttgaaatgtgataatagtcatggcaatttcataaagctcactctct 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4905 aacaaaacacagggttgaaatgtgataatagtcatggcaatttcataaagctcactctct 4964
Query: 290 ttgttttcaccttagtcgacatcactggacaataaggacatttgaaattacaagtcccgt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4965 ttgttttcaccttagtcgacatcactggacaataaggacatttgaaattacaagtcccgt 5024
Query: 350 tcttgcttaatttatccagacttttcttggaaagaacgtgatgacagggcaaagaataag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5025 tcttgcttaatttatccagacttttcttggaaagaacgtgatgacagggcaaagaataag 5084
Query: 410 gtgggttttccttcgtagtctcttctttcaataccggacatatgaatatagggtgatagt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5085 gtgggttttccttcgtagtctcttctttcaataccggacatatgaatatagggtgatagt 5144
Query: 470 tcgacaag-agggtggcagcttgacgtgaaacggtaattcatcagcagtggaccagtcca 528
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5145 tcgacaagaagggtggcagcttgacgtgaaacggtaattcatcagcagtggaccagtcca 5204
Query: 529 catgagatactttcctaatggcttcatatttagtgaacacttggaaaccgatacccccac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5205 catgagatactttcctaatggcttcatatttagtgaacacttggaaaccgataaccccac 5264
Query: 589 ttaccacgacaaggaattaacgctgattgtaaaggaagttttgttctgaagacaatactg 648
||| |||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct: 5265 ttagcacgacaaggaa-taacgctgaatgtaaaggaag-tttgttctgtagacaatactg 5322
Query: 649 ttt 651
|||
Sbjct: 5323 ttt 5325
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7310
Number of Sequences: 1807
Number of extensions: 7310
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)