BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZF11FM1.SCF screened BAC_end
         (928 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1799                                                        1396   0.0  

>3x_Contig1799 
          Length = 39855

 Score = 1396 bits (704), Expect = 0.0
 Identities = 788/808 (97%), Gaps = 6/808 (0%)
 Strand = Plus / Minus

                                                                         
Query: 87    ctaaggcaaaaacattatatcacatgcaaatagccaagcaataatgaaccttaccatcca 146
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27559 ctaaggcaaaaacattatatcacatgcaaatagccaagcaataatgaaccttaccatcca 27500

                                                                         
Query: 147   agactgattatttgctacgctaaccataagaatagtaaaccttaatttataactgaaata 206
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27499 agactgattattt-ctacgctaaccataagaatagtaaaccttaatttataactgaaata 27441

                                                                         
Query: 207   agttttagtatacaccagcgaagaaaagaaaatgtacaaatacatatatatatatagaac 266
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27440 agttttagtatacaccagcgaagaaaagaaaatgtacaaatacatatatatatatagaac 27381

                                                                         
Query: 267   tgtcacaaacgataattcttctcggagaaaacctacaaacgataggagaaaagggtccag 326
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27380 tgtcacaaacgataattcttctcggagaaaacctacaaacgataggagaaaagggtccag 27321

                                                                         
Query: 327   aggaaacgggttatttattaagaaaataggaagagagaagaattaggcatagagataatg 386
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27320 aggaaacgggttatttattaagaaaataggaagagagaagaattaggcatagagataatg 27261

                                                                         
Query: 387   atatagtaaaaggaaagcttgtccttcaaagtcttatatcatttctgagagtccatagaa 446
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27260 atatagtaaaaggaaagcttgtccttcaaagtcttatatcatttctgagagtccatagaa 27201

                                                                         
Query: 447   tgtaaaaaaaaattaataaaaggaaaaggaaaagggttaaaaagtcaagtggtatgagag 506
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27200 tgtaaaaaaaaattaataaaaggaaaaggaaaagggttaaaaagtcaagtggtatgagag 27141

                                                                         
Query: 507   tttttcatcagttgcgcttggataattaaaatttgtacagcctctgatagccaggaaatg 566
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27140 tttttcatcagttgcgcttggataattaaaatttgtacagcctctgatagccaggaaatg 27081

                                                                         
Query: 567   tgtaagagtcacagatctctgacatgtcgtatcggtagtaattgaattaaacttaaagtc 626
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27080 tgtaagagtcacagatctctgacatgtcgtatcggtagtaattgaattaaacttaaagtc 27021

                                                                         
Query: 627   aatttgtattgaatcctatttctatttcatttgagtttagtttagttttgtctccgccct 686
             ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 27020 aatttgtattgtatcctatttctatttcatttgagtttagtttagtttcgtctccgccct 26961

                                                                         
Query: 687   gcacgcttctttgatcttt-aatttaaccagagaatcgggagatcgacggccgatctaca 745
             ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 26960 gcacgcttctttgatctttcaattcaaccagagaatcgggagatcgacggccgatctaca 26901

                                                                         
Query: 746   attcgaacattttcgatgacaagtcattaaggaaagagagggt-gatacagatatcttga 804
             ||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 26900 attcgaacattttcgatgacaagtcatcaaggaaagagaaggtggatacagatatcttga 26841

                                                                         
Query: 805   acagttgttttttagtgccactggaacagtcaatttgag-attataagattcaggaagg- 862
             ||||||| ||| ||||||||||| | ||||||||||||| || ||||||| |||||||| 
Sbjct: 26840 acagttg-tttctagtgccactgaaccagtcaatttgagaataataagatccaggaagga 26782

                                         
Query: 863   aagtggtataaaaaaagattgtaaaaaa 890
             |||| ||| ||||||||  |||||||||
Sbjct: 26781 aagtagtagaaaaaaaggatgtaaaaaa 26754


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,183
Number of Sequences: 1807
Number of extensions: 11183
Number of successful extensions: 228
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)