BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZG01FM1.SCF screened BAC_end
         (918 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig886                                                         1376   0.0  

>3x_Contig886 
          Length = 4262

 Score = 1376 bits (694), Expect = 0.0
 Identities = 805/833 (96%), Gaps = 7/833 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   tttttagattttgtacacttttttttttgtcctactacgctttcggacattttctgtctt 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1858 tttttagattttgtacacttttttttttgtcctactacgctttcggacattttctgtctt 1917

                                                                        
Query: 147  tcttagcttctattgatagcaaaaaaaaaggttcaaatcaaaagtcacggatacaagata 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1918 tcttagcttctattgatagcaaaaaaaaaggttcaaatcaaaagtcacggatacaagata 1977

                                                                        
Query: 207  taacctagctgacgattactactggcgaaacactcacaagacagagttttactagttgat 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1978 taacctagctgacgattactactggcgaaacactcacaagacagagttttactagttgat 2037

                                                                        
Query: 267  aaaag-ttaaacaaaatattagccacacccatagagtttacgcttttcaaactgctcaca 325
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2038 aaaaggttaaacaaaatattagccacacccatagagtttacgcttttcaaactgctcaca 2097

                                                                        
Query: 326  ccgaaaaacaaaaacccttttcttactttactatcttttttttttgattttatttcttcg 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2098 ccgaaaaacaaaaacccttttcttactttactatcttttttttttgattttatttcttcg 2157

                                                                        
Query: 386  gtttaggtttttccttatttgacagaaaataggcaaaagatatagcaacctacctccgca 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2158 gtttaggtttttccttatttgacagaaaataggcaaaagatatagcaacctacctccgca 2217

                                                                        
Query: 446  aaaaaaggaaaaaggtatctgaactgctatttggaaatcaaaccttacatctgtttttac 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2218 aaaaaaggaaaaaggtatctgaactgctatttggaaatcaaaccttacatctgtttttac 2277

                                                                        
Query: 506  ctgctattttttttttttttggtgtttgattttaccgtgcaacaagatccgattcagaag 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2278 ctgctattttttttttttttggtgtttgattttaccgtgcaacaagatccgattcagaag 2337

                                                                        
Query: 566  gaaaatcttggtgaaggaaaatctgaaaatatcagacgggcaagtcctcattactgcact 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2338 gaaaatcttggtgaaggaaaatctgaaaatatcagacgggcaagtcctcattactgcact 2397

                                                                        
Query: 626  aaacaaacaaaaaattctgcatctttcttttgctcttctgttgcttttaattagaacctt 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2398 aaacaaacaaaaaattctgcatctttcttttgctcttctgttgcttttaattagagcctt 2457

                                                                        
Query: 686  tcctttc-tttntttcacatttttttgctttaatcggaaaaaatccagctctttgtcttt 744
            ||||| | ||| |||||||||||||||||||| |||||||||  |||||||| |||||||
Sbjct: 2458 tccttccttttttttcacatttttttgctttattcggaaaaatcccagctctctgtcttt 2517

                                                                        
Query: 745  ttacagggtggactgacaaga-ttatattaaaatcagcctttggattgcaacggaaaa-c 802
            |||||||||| |||||||||| |||||||| |||||||||||| |||||||||||||| |
Sbjct: 2518 ttacagggtgtactgacaagatttatattagaatcagcctttgcattgcaacggaaaagc 2577

                                                                        
Query: 803  ttaaacgacccaagtccaggccccatttttaggaaatattgatctggatttgattgggcc 862
            | ||||||| ||||| ||||| | ||||||||||||||||||||| ||| ||||| ||||
Sbjct: 2578 taaaacgacacaagtacaggcacaatttttaggaaatattgatct-gatctgatttggcc 2636

                                                                 
Query: 863  agaccagacctttttttgaataacccccgaacaaaaccggccggataaacgat 915
            |||||||||| | ||||||||||| | ||| ||||| ||||||||||||||||
Sbjct: 2637 agaccagacc-tattttgaataacgcacgagcaaaa-cggccggataaacgat 2687


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,432
Number of Sequences: 1807
Number of extensions: 19432
Number of successful extensions: 474
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)