BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZG04RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig281 1277 0.0
>3x_Contig281
Length = 946
Score = 1277 bits (644), Expect = 0.0
Identities = 729/751 (97%), Gaps = 5/751 (0%)
Strand = Plus / Minus
Query: 48 cggatgcattcagagtacacatttgcggtatctgtgggttaatgtcagttgttgcaaagt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cggatgcattcagagtacacatttgcggtatctgtgggttaatgtcagttgttgcaaagt 709
Query: 108 tgaagcacaatcaatttgaatgtcgttcatgtaaaaacaaaattgacatttatcaagtgc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgaagcacaatcaatttgaatgtcgttcatgtaaaaacaaaattgacatttatcaagtgc 649
Query: 168 acattccttatgcagctaagttactattccaagaattaatggccatgaatattgcaccac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 acattccttatgcagctaagttactattccaagaattaatggccatgaatattgcaccac 589
Query: 228 gtctttacactgaccgttcaaaggatttttaataaacatatattgaatgcatgatatcgc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gtctttacactgaccgttcaaaggatttttaataaacatatattgaatgcatgatatcgc 529
Query: 288 tcttgcgatgtcttttaaaaaggtaatgtaaaaaataaaattaaacttaaaattaagcaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tcttgcgatgtcttttaaaaaggtaatgtaaaaaataaaattaaacttaaaattaagcaa 469
Query: 348 taatttgtactggtttataatgttttgtagaatataaagaaaataatttaaaagcaacaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 taatttgtactggtttataatgttttgtagaatataaagaaaataatttaaaagcaacaa 409
Query: 408 ttagcattgtattatgaaacccccttagtaagtagttagaactgccataaacaactatat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttagcattgtattatgaaacccccttagtaagtagttagaactgccataaacaactatat 349
Query: 468 acactatcttgtcttgttctttttcttttgtcccaattcactgttcgttcttacactgtc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 acactatcttgtcttgttctttttcttttgtcccaattcactgttcgttcttacactgtc 289
Query: 528 gccaattttcacatcaaactggaaaagtcgaaaatcataacttgcttcaagaatttttaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gccaattttcacatcaaactggaaaagtcgaaaatcataacttgcttcaagaatttttaa 229
Query: 588 ccattcatactaactgcaacatatagtagtgacatatttgatcctgggagatttaataac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ccattcatactaactgcaacatatagtagtgacatatttgatcctgggagatttaataac 169
Query: 648 catctttacttgcttg-agttattctttactggcgtangggaaaattaaatacctggtac 706
||||||||| |||||| ||| || ||| ||||||||| |||||| ||| |||||| |||
Sbjct: 168 catctttac-tgcttgaagtaatacttcactggcgtaggggaaatctaattacctgctac 110
Query: 707 tgttttacttatttaaag-accgcacctttttggtgcctcattttcacttgggaattcca 765
||| |||||||||||||| |||||||| ||||||||| |||| |||||| ||| ||||
Sbjct: 109 tgtattacttatttaaagaaccgcacc-ttttggtgctgcattatcactt-ggatatcca 52
Query: 766 ccttttattaccataaactgaattcccaagg 796
|||||||||| ||| |||||||||| |||||
Sbjct: 51 ccttttattagcatcaactgaattcgcaagg 21
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8572
Number of Sequences: 1807
Number of extensions: 8572
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)