BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZG05FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1702 1578 0.0
>3x_Contig1702
Length = 15454
Score = 1578 bits (796), Expect = 0.0
Identities = 844/854 (98%), Gaps = 5/854 (0%)
Strand = Plus / Minus
Query: 87 tcagacgaagaaagaatactgaccaaaatcaaatccacaacggctaaacatgaactgcaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5915 tcagacgaagaaagaatactgaccaaaatcaaatccacaacggctaaacatgaactgcaa 5856
Query: 147 ttgagtaagttgaaagatacgctcgtacagttagaaaatgaaaaaacatcgttacagtca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5855 ttgagtaagttgaaagatacgctcgtacagttagaaaatgaaaaaacatcgttacagtca 5796
Query: 207 tctttactacctgttggaagcgagaggttagctaccatcaagagaatacataacttggaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5795 tctttactacctgttggaagcgagaggttagctaccatcaagagaatacataacttggaa 5736
Query: 267 aaaagaatatcctcattcaagaaagatatggaaaggcaacaagcttatgtcaaacaattc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5735 aaaagaatatcctcattcaagaaagatatggaaaggcaacaagcttatgtcaaacaattc 5676
Query: 327 gaaaatcaactgaaggtagtttctaaaacaaaaaagtcgtttgagaaagagttagaaaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5675 gaaaatcaactgaaggtagtttctaaaacaaaaaagtcgtttgagaaagagttagaaaat 5616
Query: 387 attcatgccaatctcaataaattcaatttatctgaagaagatttaaaacaatatgagcta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5615 attcatgccaatctcaataaattcaatttatctgaagaagatttaaaacaatatgagcta 5556
Query: 447 ttgaaagagaagtatttaagttctggaggctctcatatcgaggaaaagttggctatctta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5555 ttgaaagagaagtatttaagttctggaggctctcatatcgaggaaaagttggctatctta 5496
Query: 507 aaaaacgacgagtttgaactaaacgaagagagtgaacttattaacaaaagactgaaaaca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5495 aaaaacgacgagtttgaactaaacgaagagagtgaacttattaacaaaagactgaaaaca 5436
Query: 567 accagggaacgcataagtgacgaattacaggtcgatgtcgatgctttagaagcagatctc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5435 accagggaacgcataagtgacgaattacaggtcgatgtcgatgctttagaagcagatctc 5376
Query: 627 aacgaggtaacacaaaggttgaatgataaaaactcgatagcagctgctaagtctaaagaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5375 aacgaggtaacacaaaggttgaatgataaaaactcgatagcagctgctaagtctaaagaa 5316
Query: 687 tggaaaggtattcaaactaatcttgagtccctaaagaataaggaatatgaactgaatttt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5315 tggaaaggtattcaaactaatcttgagtccctaaagaataaggaatatgaactgaatttt 5256
Query: 747 agcttgagagacgtacttctgaaaattgacgatcttaacgctgatc-aagagagaccaag 805
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5255 agcttgagagacgtacttctgaaaattgacgatcttaacgctgatcaaagagagaccaag 5196
Query: 806 aagg-aagnanactaagagagattgtttctatgcttaaagaga-tatattccggtgtgaa 863
|||| ||| | ||||||||||| ||||||||||||| |||||| ||||| ||||||||||
Sbjct: 5195 aaggaaagaaaactaagagagaatgtttctatgctt-aagagattatatcccggtgtgaa 5137
Query: 864 aggattagtacacgatctatgtcattcgaaaaaaga-aagtatgcgattgcagtatcaac 922
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 5136 aggattagtacacgatctatgtcatccgaaaaaagagaagtatgcgattgcagtatcaac 5077
Query: 923 gatacttggtaaaa 936
||||||||||||||
Sbjct: 5076 gatacttggtaaaa 5063
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7968
Number of Sequences: 1807
Number of extensions: 7968
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)