BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZG06FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1499 0.0
>3x_Contig1442
Length = 8270
Score = 1499 bits (756), Expect = 0.0
Identities = 803/815 (98%), Gaps = 3/815 (0%)
Strand = Plus / Minus
Query: 91 cctgcgttaactcaaaaggtgttctggacaggttactatgccaaattaaaaatgaagaag 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7970 cctgcgttaactcaaaaggtgttctggacaggttactatgccaaattaaaaatgaagaag 7911
Query: 151 ttccacattccaggtggtgacactctaggtaacattttgttcaagaaggtcagagaagcc 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7910 ttccacattccaggtggtgacactctaggtaacattttgttcaagaaggtcagagaagcc 7851
Query: 211 accggtggtcatttaagatttgtgttgaacggtggttccccattgtctagagaagcacaa 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7850 accggtggtcatttaagatttgtgttgaacggtggttccccattgtctagagaagcacaa 7791
Query: 271 gagtttatcacaaacttgatttgtccaatgttgattggttatggtttgactgaaaccatg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7790 gagtttatcacaaacttgatttgtccaatgttgattggttatggtttgactgaaaccatg 7731
Query: 331 gctaacacaactatcttacaaccagaacattttgaatacggagtcgctggtgacattgtc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7730 gctaacacaactatcttacaaccagaacattttgaatacggagtcgctggtgacattgtc 7671
Query: 391 ggtagtatcactgtcaagttggtcgacgttgaagaattgggctacttcgcaaagaattct 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7670 ggtagtatcactgtcaagttggtcgacgttgaagaattgggctacttcgcaaagaattct 7611
Query: 451 caaggtgaagtctggattaaaggtgaacctgtcactcgagaatattacaaaaacgaggaa 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7610 caaggtgaagtctggattaaaggtgaacctgtcactcgagaatattacaaaaacgaggaa 7551
Query: 511 gagactaagggttctatcacagatgatggctggttcaaaactggtgacattgcggaatgg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7550 gagactaagggttctatcacagatgatggctggttcaaaactggtgacattgcggaatgg 7491
Query: 571 actccaaagggtcaattaaagattattgaccgtaaaaagaacttggtgaagactcagaat 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7490 actccaaagggtcaattaaagattattgaccgtaaaaagaacttggtgaagactcagaat 7431
Query: 631 ggtgaatacatcgcattagagaagttagaatccgtttacagatcttgtccatttgttcaa 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7430 ggtgaatacatcgcattagagaagttagaatccgtttacagatcttgtccatttgttcaa 7371
Query: 691 aacatctgtgtttacgctgatcaaac-aaggttaaacccgtcggtatcattgttccaaat 749
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 7370 aacatctgtgtttacgctgatcaaacaaaggttaaacccgtcggtatcattgttccaaat 7311
Query: 750 gaggctgccatcaccgagaaggctatcaaaatggatctactgacaaa-ggcgaagatgtt 808
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct: 7310 gaggctgccatcaccgagaaggctatcaagatggatctactgaaaaagggcgaagatgtt 7251
Query: 809 acccatttgtaccacaatgacactttgaagcacgaaatcctccaagaaagtgggaaggtt 868
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7250 acccatttgtaccacaatgacactttgaagcacgaaatcctccaagaaatgtggaaggtt 7191
Query: 869 -gcaagagccacagcctnagcgatattgaattgct 902
|||||||||| |||| |||| ||||||||||||
Sbjct: 7190 ggcaagagccaaggcctgagcggtattgaattgct 7156
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5962
Number of Sequences: 1807
Number of extensions: 5962
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)