BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZG07FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1209 1532 0.0
>3x_Contig1209
Length = 5033
Score = 1532 bits (773), Expect = 0.0
Identities = 820/831 (98%), Gaps = 4/831 (0%)
Strand = Plus / Minus
Query: 87 ctgaagtgctgttagtcgtgcgatgtatgccttaatctataatctttaatattctgttcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2569 ctgaagtgctgttagtcgtgcgatgtatgccttaatctataatctttaatattctgttcg 2510
Query: 147 ccaccttacatttcagaaggtgtatcgatctatatatttcatatttacaaaacgtcaatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2509 ccaccttacatttcagaaggtgtatcgatctatatatttcatatttacaaaacgtcaatc 2450
Query: 207 gaagcatgaaagtcgttaataatgacaattctccaaacaaatgctgtgagaagtggatga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2449 gaagcatgaaagtcgttaataatgacaattctccaaacaaatgctgtgagaagtggatga 2390
Query: 267 actagatatgtgacagcaaatcatctccatctgcactttcatcatcaaataatgtagttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 actagatatgtgacagcaaatcatctccatctgcactttcatcatcaaataatgtagttc 2330
Query: 327 aatgcaatacttcatgcctttctttttgagatataaaccttttatatgctatctatagac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 aatgcaatacttcatgcctttctttttgagatataaaccttttatatgctatctatagac 2270
Query: 387 tgtttggcatttttccaagactctgaacaatcctttaaccatgatgttatattgtgggct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 tgtttggcatttttccaagactctgaacaatcctttaaccatgatgttatattgtgggct 2210
Query: 447 agttcgcggaaaatgaggaaccacttctcatggaaatatttctctaagttattcaaagag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 agttcgcggaaaatgaggaaccacttctcatggaaatatttctctaagttattcaaagag 2150
Query: 507 ttatccattgactcattgacttgttgtaagtccttttcgatgagtttgaaacattcattc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2149 ttatccattgactcattgacttgttgtaagtccttttcgatgagtttgaaacattcattc 2090
Query: 567 agtttttcaagttccttttctagtttgtttacctgtacaacccgttcgtctttagttaga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 agtttttcaagttccttttctagtttgtttacctgtacaacccgttcgtctttagttaga 2030
Query: 627 agatgaggttcgacttcacttgaaatcgaatcagatccagacttgttgtttggagatgct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 agatgaggttcgacttcacttgaaatcgaatcagatccagacttgttgtttggagatgct 1970
Query: 687 gatgacctgaaaagccccattatctgtttgtccgtgtgattcttgtttgctgacttacgc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 gatgacctgaaaagccccattatctgtttgtccgtgtgattcttgtttgctgacttacgc 1910
Query: 747 gtcatggagtccataacttgagcaacgg-gggtgattcctctgcattttatttcaatgcc 805
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 1909 gtcatggagtccataacttgagcaacggtgggtgattcctctgcatttaatttcaatgcc 1850
Query: 806 tcgcccaatcgtacagcttgtaggtctgcctctttccattcacggaattctatcttttct 865
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 1849 tcgcccaatcgtacagcttgtaggtctgcctctttcaattcacgg-attctatctttcct 1791
Query: 866 ctcnctttatcgnaggttcaattgggtaaaattgttccttgcttgaaattt 916
|| |||||||| || |||||||| ||||||||||| ||||||||||||||
Sbjct: 1790 ct-tctttatcgtagtttcaattgtgtaaaattgtt-cttgcttgaaattt 1742
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6685
Number of Sequences: 1807
Number of extensions: 6685
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)