BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZG08FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1475 0.0
>3x_Contig1801
Length = 57606
Score = 1475 bits (744), Expect = 0.0
Identities = 825/848 (97%), Gaps = 3/848 (0%)
Strand = Plus / Plus
Query: 87 actggtctgtaatattctaactgtgcagaagagaaacatggaatcagactttacttgaca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52446 actggtctgtaatattctaactgtgcagaagagaaacatggaatcagactttacttgaca 52505
Query: 147 tcaaagaggtagaaccaaagaaaggtcttaacatgatgttaatcttcattaccgtaaaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52506 tcaaagaggtagaaccaaagaaaggtcttaacatgatgttaatcttcattaccgtaaaga 52565
Query: 207 atgcgaagaccaacacgatgattaacctacaaaaaagggttggaggccaataaaattcac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52566 atgcgaagaccaacacgatgattaacctacaaaaaagggttggaggccaataaaattcac 52625
Query: 267 taatatgcattaactacagtgttgagtttaacacaactagatataataaccgcgtggcta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52626 taatatgcattaactacagtgttgagtttaacacaactagatataataaccgcgtggcta 52685
Query: 327 ttatcagatctgaagaaattctaaatacaatcgtgtggaccaaaccctatcaatcatcgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52686 ttatcagatctgaagaaattctaaatacaatcgtgtggaccaaaccctatcaatcatcgt 52745
Query: 387 ttgtacatttgtagaagacatcacattcattggcactgatcaagggcaattgacacatgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52746 ttgtacatttgtagaagacatcacattcattggcactgatcaagggcaattgacacatgt 52805
Query: 447 atggattcaatagtcgtgaataatggcttgatggaggagaatggcgtatccaacaacgac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52806 atggattcaatagtcgtgaataatggcttgatggaggagaatggcgtatccaacaacgac 52865
Query: 507 ttactcgggatagatattgagtacagaagaaattatcatattaaattcgagatgaagaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52866 ttactcgggatagatattgagtacagaagaaattatcatattaaattcgagatgaagaat 52925
Query: 567 atatgatccccacaagcatccgctattgatattccataatgtgataattccaaatataac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52926 atatgatccccacaagcatccgctattgatattccataatgtgataattccaaatataac 52985
Query: 627 aatgttgttatacctacaacgacttaacagcttgtggtgaaagcatagcgatactcgcca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52986 aatgttgttatacctacaacgacttaacagcttgtggtgaaagcatagcgatactcgcca 53045
Query: 687 gaatacggtgtatattaaatagtcaattgatatcaaatgcatataatacgagcgaaaaga 746
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 53046 gataacggtgtatattaaatagtcaattgatatcaaatgcatataatacgagcgaaagaa 53105
Query: 747 acgtcatttgttcaggttagcttgtgaccagaaagaatgcgcattattggaaattatgtc 806
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 53106 acgtcatttgttcagggtagcttgtgaccagaaagaatgcgcattagtggaaattaggtc 53165
Query: 807 accttgacttcagtttgcttttctttgttttttgcctgtttctca-aattaacttttttt 865
|||| ||||||||||||||||| || ||||||||||||||||| | ||||||||||||
Sbjct: 53166 acctgaccttcagtttgcttttctctg-tttttgcctgtttctcagatttaacttttttt 53224
Query: 866 tcgatttcagggttccaatagg-attacttggggcgagctttttttgtaaaagatctttc 924
|||||||| || ||||||||| || |||||| ||||||||||| || ||||||||| ||
Sbjct: 53225 ccgatttcaagggtccaataggaataacttggtgcgagctttttctgaaaaagatctctc 53284
Query: 925 acagagat 932
||||||||
Sbjct: 53285 acagagat 53292
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7041
Number of Sequences: 1807
Number of extensions: 7041
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)