BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZG09FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1627 1193 0.0
>3x_Contig1627
Length = 15708
Score = 1193 bits (602), Expect = 0.0
Identities = 650/661 (98%), Gaps = 4/661 (0%)
Strand = Plus / Plus
Query: 88 tagatcagtctctaattgaactttttgcatgatctctaacatgaaatcagtggaactagc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 7665 tagatcagtctctaattgaactttttgcatgatctctaacatgaaatcagtggaa-tagc 7723
Query: 148 tttgcaaaataatcttggaatggtcgtttatcatcgtagaaacaattttgaaaaggtgta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7724 tttgcaaaataatcttggaatggtcgtttatcatcgtagaaacaattttgaaaaggtgta 7783
Query: 208 gtgtggattttgaataaaataatgggtccccggaagtatgtgtcattaacgtcctggatt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7784 gtgtggattttgaataaaataatgggtccccggaagtatgtgtcattaacgtcctggatt 7843
Query: 268 gttgtgcaatgttatcacatatatatttggagtaaagatctattcctagatccgaagcac 327
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7844 gttgtgcaatgttatcacatatatatttggagtaaagatctattccaagatccgaagcac 7903
Query: 328 caatttttggaaatagtttgaagcattcagtcaatgtgccaacatccacgtctcttgtgg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7904 caatttttggaaatagtttgaagcattcagtcaatgtgccaacatccacgtctcttgtgg 7963
Query: 388 ctctggtaaacctatcataaaatactttgcagagatgagttttccacttgtctataagct 447
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7964 ctctggtaaacctatcagaaaatactttgcagagatgagttttccacttgtctataagct 8023
Query: 448 gaaccggtggatctggaagttcactagtgggtacacaccgctgaacaaactgcgagtgta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8024 gaaccggtggatctggaagttcactagtgggtacacaccgctgaacaaactgcgagtgta 8083
Query: 508 ttatagagtctggcagctgatcaatctcatagatacattgggctatcattgggtaatttg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8084 ttatagagtctggcagctgatcaatctcatagatacattgggctatcattgggtaatttg 8143
Query: 568 gttccttagtgtctaatgcatcatttattatttttaggttatacttc-aaagtttgacag 626
||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 8144 gttccttcgtgtctaatgcatcatttattatttttaggttattcttcaaaagtttgacag 8203
Query: 627 aatctacaaaatctgccaattgattaatatggtctgcttcatccttgatggaattaagcc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8204 aatctacaaaatctgccaattgattaatatggtctgcttcatccttgatggaattaagcc 8263
Query: 687 tattggaaattgatatcgattgcacgtttataattagatanagatttcaaggncttcatg 746
|||||||||||||||||||||||||| ||| ||||||||| ||||| ||||| |||||||
Sbjct: 8264 tattggaaattgatatcgattgcacg-ttagaattagatagagattccaagg-cttcatg 8321
Query: 747 g 747
|
Sbjct: 8322 g 8322
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7288
Number of Sequences: 1807
Number of extensions: 7288
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)