BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZG09RM1.SCF screened BAC_end
         (950 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1031                                                        1156   0.0  

>3x_Contig1031 
          Length = 5135

 Score = 1156 bits (583), Expect = 0.0
 Identities = 638/651 (98%), Gaps = 4/651 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   tagaaaatgaaaaagtgaaagaaattgatgaattagtgaaaaaaaattcgaaatacacag 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1328 tagaaaatgaaaaagtgaaagaaattgatgaattagtgaaaaaaaattcgaaatacacag 1387

                                                                        
Query: 108  tgggattaacaatatattttcaagaaaaagcttagagcagcttcagtactggttcaagga 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388 tgggattaacaatatattttcaagaaaaagcttagagcagcttcagtactggttcaagga 1447

                                                                        
Query: 168  ttattcggaaccaacagcaatagcagattctgatcgaactcagaagtataaaatattgaa 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1448 ttattcggaaccaacagcaatagcagattctgatcgaactcagaagtataaaatattgaa 1507

                                                                        
Query: 228  aagatgagaccaattgttttgaagggtcatgaacgtccattaacgcaagttaagttcaac 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1508 aagatgagaccaattgttttgaagggtcatgaacgtccattaacgcaagttaagttcaac 1567

                                                                        
Query: 288  cgtgatggtgacttagtttttgcttgctccaaagatagtgttgcctctatctggtacgct 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1568 cgtgatggtgacttagtttttgcttgctccaaagatagtgttgcctctatctggtacgct 1627

                                                                        
Query: 348  atcaacggtgaaagattaggtactctagatgatcattctggtactatctggtctattgat 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1628 atcaacggtgaaagattaggtactctagatgatcattctggtactatctggtctattgat 1687

                                                                        
Query: 408  gttgatgaaagcacaacttatgcgttgactggtggtgctgatttctgtttcaagatctgg 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1688 gttgatgaaagcacaacttatgcgttgactggtggtgctgatttctgtttcaagatctgg 1747

                                                                        
Query: 468  aaagttgctacaggtgtagcagtccattctgtctctaccagaagtccagttttgagagtc 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1748 aaagttgctacaggtgtagcagtccattctgtctctaccagaagtccagttttgagagtc 1807

                                                                        
Query: 528  gaattttctccagacggtagcaaacttttgattgtacttgatgcccgtatgggtcacatt 587
            |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 1808 gaattttctccagacggtagcaaacttttgattgtacttgatgccgttatgggtcacatt 1867

                                                                        
Query: 588  ggttccattggttgtttactcttttgatcagaaacgaaaaacgtgaaatcgtgaatgtga 647
            ||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||
Sbjct: 1868 ggttccatt-gttgtttactc-tttgatcagaaacgaaaacggtgaaatcgtgaatgtga 1925

                                                               
Query: 648  aggaaggacccagactacgaaaattccaccattcgagccagctaccaaggt 698
            ||| |||| ||||||||||||| | | |||| |||||| ||||||||||||
Sbjct: 1926 agg-aggaaccagactacgaaattacaacca-tcgagcaagctaccaaggt 1974


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8075
Number of Sequences: 1807
Number of extensions: 8075
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)