BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZG11FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1323 1116 0.0
>3x_Contig1323
Length = 7472
Score = 1116 bits (563), Expect = 0.0
Identities = 613/627 (97%), Gaps = 2/627 (0%)
Strand = Plus / Plus
Query: 87 aacatttatgatctgtcagctgacaaagtctctcaaattgattctacgagtgatgattcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 aacatttatgatctgtcagctgacaaagtctctcaaattgattctacgagtgatgattcg 3623
Query: 147 ctcatcactgaagtc-catgggtcggaaaccatgaaattattgcaaaagtttcagatcgt 205
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 ctcatcactgaagtcacatgggtcggaaaccatgaaattattgcaaaagtttcagatcgt 3683
Query: 206 tcttcagacattttttccgtcatcatggtagatgccgcggatggatcgcgtagtgaagtg 265
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3684 tcttcagacattttgaccgtcatcatggtagatgccgcggatggatcgcgtagtgaagtg 3743
Query: 266 tctcgaatagaagaaagcgatggtgggtggtgggagatcactcacaagaccacttttgtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3744 tctcgaatagaagaaagcgatggtgggtggtgggagatcactcacaagaccacttttgtt 3803
Query: 326 cctaaagataagtcaagatcaagatcatataatggttacattgacttggtaccggttgat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3804 cctaaagataagtcaagatcaagatcatataatggttacattgacttggtaccggttgat 3863
Query: 386 ggctacaatcatctcgcatactttacaacaaacgtaaccactgagattccaagtgttgtc 445
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3864 ggctacaatcatctcgtatactttacaacaaacgtaaccacagagattccaagtgttgtc 3923
Query: 446 ttaacctcaggtgaatgggaagtcgtggatggaccagctgctttcgatgaagagttcaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3924 ttaacctcaggtgaatgggaagtcgtggatggaccagctgctttcgatgaagagttcaac 3983
Query: 506 aatgtatatttcattgctactaaaaagtcatcgacggaaagacatttatattacgtcaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3984 aatgtatatttcattgctactaaaaagtcatcgacggaaagacatttatattacgtcaat 4043
Query: 566 ttagaaaggccacagaatgtttttgctgttaccgatgaaaggttaaatgggtactattct 625
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4044 ttagaaaggccacagaaggtttatgctgttaccgatgaaaggttaaatgggtactattct 4103
Query: 626 gctttcttctcagcaggcgcaagattcttgctattgaactacttatgaccagatgctccc 685
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 4104 gcttctttctcagcaggcgcaagattcttgctattgaactacttaggaccagatg-tccc 4162
Query: 686 ttatcagaagataattgtttttaagtc 712
|||||| |||||||||| ||| |||||
Sbjct: 4163 ttatcaaaagataattgatttaaagtc 4189
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6830
Number of Sequences: 1807
Number of extensions: 6830
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)