BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZG12FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig886 1354 0.0
>3x_Contig886
Length = 4262
Score = 1354 bits (683), Expect = 0.0
Identities = 702/706 (99%), Gaps = 2/706 (0%)
Strand = Plus / Minus
Query: 87 caggttgggaccattaacgaacaataaaaaaaaagtttacgttccgatagataaacttaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4130 caggttgggaccattaacgaacaataaaaaaaaagtttacgttccgatagataaacttaa 4071
Query: 147 gattttattcatccaggttttggtggggtggttgttgatagtaactttgatatttcatga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4070 gattttattcatccaggttttggtggggtggttgttgatagtaactttgatatttcatga 4011
Query: 207 attgataattctgttgtgaaggatggttatgcattggtgcgggaggaattgcgtacattg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4010 attgataattctgttgtgaaggatggttatgcattggtgcgggaggaattgcgtacattg 3951
Query: 267 aatgctgttgagatggaccttgcccatgactctgaattaatccctggccttgtgatgggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3950 aatgctgttgagatggaccttgcccatgactctgaattaatccctggccttgtgatgggt 3891
Query: 327 gtgctccttgaacctgccccggttggcggtagaaaggacccgacgaaattgaaggcttag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3890 gtgctccttgaacctgccccggttggcggtagaaaggacccgacgaaattgaaggcttag 3831
Query: 387 tggatgaaggaggagtcaccgaatgactttgtgagccttgtaaattcccctggtactggg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3830 tggatgaaggaggagtcaccgaatgactttgtgagccttgtaaattcccctggtactggg 3771
Query: 447 gttggatattactttgttgtggttgctgctgctgttgctgccgttgctgttgctgccgtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3770 gttggatattactttgttgtggttgctgctgctgttgctgccgttgctgttgctgccgtt 3711
Query: 507 gctgttgctgtttctgttgcgactgttgttgcggctgctgatgctgtttagggaccatta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3710 gctgttgctgtttctgttgcgactgttgttgcggctgctgatgctgtttagggaccatta 3651
Query: 567 tggaattgtggttcatgtttggagatccaggactgttgtgatggcccggcatgaactgag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3650 tggaattgtggttcatgtttggagatccaggactgttgtgatggcccggcatgaactgag 3591
Query: 627 ccaactgcatccgcaactgttcattttcctgttgcagcagactgttcttgcgttccaaat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3590 ccaactgcatccgcaactgttcattttcctgttgcagcagactgttcttgcgttccaaat 3531
Query: 687 gtttgatgtactcatgagattttgac-aaatttgaaccttgntgactttcgaaagtggag 745
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 3530 gtttgatgtactcatgagattttgacaaaatttgaaccttgttgactttcgaaggtggag 3471
Query: 746 ccaacccttctagcgattccacaggaattagagttatcgtcacacc 791
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3470 ccaacccttctagcgattccacaggaa-tagagttatcgtcacacc 3426
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7439
Number of Sequences: 1807
Number of extensions: 7439
Number of successful extensions: 287
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)