BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZG12RM1.SCF screened BAC_end
         (879 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig388                                                         1023   0.0  

>3x_Contig388 
          Length = 1372

 Score = 1023 bits (516), Expect = 0.0
 Identities = 612/631 (96%), Gaps = 11/631 (1%)
 Strand = Plus / Minus

                                                                       
Query: 47  tattatttttaacttcataaattttttttagatatgtcaattcgcatttttgtgtcactt 106
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tattatttttaacttcagaaattttttttagatatgtcaattcgcatttttgtgtcactt 643

                                                                       
Query: 107 tatgcctgcacattttctcagacgttaagtcacgcagatgattttctatcgtctctaaag 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tatgcctgcacattttctcagacgttaagtcacgcagatgattttctatcgtctctaaag 583

                                                                       
Query: 167 gtgccttcgagatacacacaaaaatcaaaagatgccacatagatatccttgatagagata 226
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 582 gtgccttcgagatacacacaaaaatcaaaagatgccacatagatatccaagatagagata 523

                                                                       
Query: 227 atcccattacaaattttaacggaatgaagaggatcagacggccgattagtattgtatttc 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atcccattacaaattttaacggaatgaagaggatcagacggccgattagtattgtatttc 463

                                                                       
Query: 287 tactatgttttcgtaacaaaaaaaaggaacttccccagagccgtgccatcaagtggccct 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tactatgttttcgtaacaaaaaaaaggaacttccccagagccgtgccatcaagtggccct 403

                                                                       
Query: 347 gttggacccgaatagccggttccttttctataggcaaatcaagcaaaaaaaaaaaagaag 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gttggacccgaatagccggttccttttctataggcaaatcaagcaaaaaaaaaaaagaag 343

                                                                       
Query: 407 tgagccagctctcctccactctggttctcatatcggcttataaaaatgggaatgtgccga 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgagccagctctcctccactctggttctcatatcggcttataaaaatgggaatgtgccga 283

                                                                       
Query: 467 atgtgccaaaggaaaactgttgggattgtgtcaaaaaaaattgggcttcttttcat-acc 525
           ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct: 282 atgtgccaaaggaaaactg-tgggattgtgtcaaaaaaaattgggcttc-tttcatcacc 225

                                                                       
Query: 526 aaaagggtgtcgagctgtcaagcaaaaatggtgtcaaagcaagattgaac-gaaagaaga 584
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 224 aaaagggtgtcgagctgtcaagcaaaaatggtgtcaaagcaagattgaacggaaagaaga 165

                                                                       
Query: 585 aaaa-ttttcatcgc-aatcttgatcag-aatcaat-gttatcga-tttacagacctcct 639
           |||| |||||||||| |||||||||||| ||||||| || ||||| ||||||||||||||
Sbjct: 164 aaaatttttcatcgcaaatcttgatcagcaatcaatggtaatcgattttacagacctcct 105

                                          
Query: 640 gaatatggttt--aattctttatctctatcg 668
           | |||  ||||  | ||||||||||||||||
Sbjct: 104 gtataatgttttcatttctttatctctatcg 74


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,016
Number of Sequences: 1807
Number of extensions: 26016
Number of successful extensions: 219
Number of sequences better than 1.0e-20: 1
length of query: 879
length of database: 10,358,551
effective HSP length: 16
effective length of query: 863
effective length of database: 10,329,639
effective search space: 8914478457
effective search space used: 8914478457
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)