BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC26ZG12RM1.SCF screened BAC_end (879 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig388 1023 0.0 >3x_Contig388 Length = 1372 Score = 1023 bits (516), Expect = 0.0 Identities = 612/631 (96%), Gaps = 11/631 (1%) Strand = Plus / Minus Query: 47 tattatttttaacttcataaattttttttagatatgtcaattcgcatttttgtgtcactt 106 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 702 tattatttttaacttcagaaattttttttagatatgtcaattcgcatttttgtgtcactt 643 Query: 107 tatgcctgcacattttctcagacgttaagtcacgcagatgattttctatcgtctctaaag 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 642 tatgcctgcacattttctcagacgttaagtcacgcagatgattttctatcgtctctaaag 583 Query: 167 gtgccttcgagatacacacaaaaatcaaaagatgccacatagatatccttgatagagata 226 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 582 gtgccttcgagatacacacaaaaatcaaaagatgccacatagatatccaagatagagata 523 Query: 227 atcccattacaaattttaacggaatgaagaggatcagacggccgattagtattgtatttc 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 522 atcccattacaaattttaacggaatgaagaggatcagacggccgattagtattgtatttc 463 Query: 287 tactatgttttcgtaacaaaaaaaaggaacttccccagagccgtgccatcaagtggccct 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 462 tactatgttttcgtaacaaaaaaaaggaacttccccagagccgtgccatcaagtggccct 403 Query: 347 gttggacccgaatagccggttccttttctataggcaaatcaagcaaaaaaaaaaaagaag 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 gttggacccgaatagccggttccttttctataggcaaatcaagcaaaaaaaaaaaagaag 343 Query: 407 tgagccagctctcctccactctggttctcatatcggcttataaaaatgggaatgtgccga 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 342 tgagccagctctcctccactctggttctcatatcggcttataaaaatgggaatgtgccga 283 Query: 467 atgtgccaaaggaaaactgttgggattgtgtcaaaaaaaattgggcttcttttcat-acc 525 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| Sbjct: 282 atgtgccaaaggaaaactg-tgggattgtgtcaaaaaaaattgggcttc-tttcatcacc 225 Query: 526 aaaagggtgtcgagctgtcaagcaaaaatggtgtcaaagcaagattgaac-gaaagaaga 584 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 224 aaaagggtgtcgagctgtcaagcaaaaatggtgtcaaagcaagattgaacggaaagaaga 165 Query: 585 aaaa-ttttcatcgc-aatcttgatcag-aatcaat-gttatcga-tttacagacctcct 639 |||| |||||||||| |||||||||||| ||||||| || ||||| |||||||||||||| Sbjct: 164 aaaatttttcatcgcaaatcttgatcagcaatcaatggtaatcgattttacagacctcct 105 Query: 640 gaatatggttt--aattctttatctctatcg 668 | ||| |||| | |||||||||||||||| Sbjct: 104 gtataatgttttcatttctttatctctatcg 74 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 26,016 Number of Sequences: 1807 Number of extensions: 26016 Number of successful extensions: 219 Number of sequences better than 1.0e-20: 1 length of query: 879 length of database: 10,358,551 effective HSP length: 16 effective length of query: 863 effective length of database: 10,329,639 effective search space: 8914478457 effective search space used: 8914478457 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)