BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZH01FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig851 1243 0.0
>3x_Contig851
Length = 3821
Score = 1243 bits (627), Expect = 0.0
Identities = 654/659 (99%), Gaps = 3/659 (0%)
Strand = Plus / Minus
Query: 86 tggaaattgcttctactttattggaagaaatttaagatattatatgctatatctaacgta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2564 tggaaattgcttctactttattggaagaaatttaagatattatatgctatatctaacgta 2505
Query: 146 atgtacctatataattgttctgaacaaaattaccaaaatgcaatgaagataatcatctat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2504 atgtacctatataattgttctgaacaaaattaccaaaatgcaatgaagataatcatctat 2445
Query: 206 agtgatttgtttaattgttgttcatagatctttcatgaggatcatttaaaggcctagaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2444 agtgatttgtttaattgttgttcatagatctttcatgaggatcatttaaaggcctagaag 2385
Query: 266 gggtatattgctgttgagcagcagattgcccagattgttggaaatttgggaaagtattca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2384 gggtatattgctgttgagcagcagattgcccagattgttggaaatttgggaaagtattca 2325
Query: 326 ttggttgtgacactggagtggtgtttggtgggaaaaattgtaggggcatgtttggtagtg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2324 ttggttgtgacactggagtggtgtttggtgggaaaaattgtaggggcatgtttggtagtg 2265
Query: 386 gtatattgctctggggtggaaacatttgtggctgggaagcaaacggttgttgaaactgtt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2264 gtatattgctctggggtggaaacatttgtggctgggaagcaaacggttgttgaaactgtt 2205
Query: 446 gctggtactggaatattccttgctgctgggcaagtggttgattaggataacttggatatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2204 gctggtactggaatattccttgctgctgggcaagtggttgattaggataacttggatatt 2145
Query: 506 gaggttgataaaagcctccattgttgtatggaggttgttgattaccatacgccattggtt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2144 gaggttgataaaagcctccattgttgtatggaggttgttgattaccatacgccattggtt 2085
Query: 566 gagaaaattgtgggttgtacatatgtgggaatccaggcggaaactgcattggattagttg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2084 gagaaaattgtgggttgtacatatgtgggaatccaggcggaaactgcattggattagttg 2025
Query: 626 gaactattgattttgaatgcggtctttcatttttcggtctcttacaagaaatttgtccct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2024 gaactattgattttgaatgcggtctttcatttttcggtctcttacaagaaatttgtccct 1965
Query: 686 cagaactgccatctttcggtatttcttggattgacttctatttttctctgatatttctt 744
||||||||||||| |||||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 1964 cagaactgccatc-ttcggtatctc-tgtattgacttcta-ttttctctgatatttctt 1909
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8398
Number of Sequences: 1807
Number of extensions: 8398
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)