BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZH02FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1002 1380 0.0
>3x_Contig1002
Length = 4066
Score = 1380 bits (696), Expect = 0.0
Identities = 816/847 (96%), Gaps = 8/847 (0%)
Strand = Plus / Minus
Query: 87 tgagccagatgctagtagaataaacggcctgttacataccgtgcgttgaaatgcttataa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3127 tgagccagatgctagtagaataaacggcctgttacataccgtgcgttgaaatgcttataa 3068
Query: 147 ctttgaaacagcctttctctagtcaaatttaaatagctaagggttttctgttggattgat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3067 ctttgaaacagcctttctctagtcaaatttaaatagctaagggttttctgttggattgat 3008
Query: 207 agttcgaagtgagaatgttaatgaatctttcctggataagaaaagaattctcgaattcag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3007 agttcgaagtgagaatgttaatgaatctttcctggataagaaaagaattctcgaattcag 2948
Query: 267 aatgatagaataatgtatttaattgatttcgataaaataaatgaaacgtaaagagaatac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2947 aatgatagaataatgtatttaattgatttcgataaaataaatgaaacgtaaagagaatac 2888
Query: 327 gtgaaatgattctcaaatttaaataagtgtccgtttataaatcattaatttttggctttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2887 gtgaaatgattctcaaatttaaataagtgtccgtttataaatcattaatttttggctttg 2828
Query: 387 gatattgtttgtgtaaatttttggattcaatttttttaaaacttgatgttgatactaaga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2827 gatattgtttgtgtaaatttttggattcaatttttttaaaacttgatgttgatactaaga 2768
Query: 447 agtcctatttcatagggttcaaattcaaatgtttggtatgatttttattcttaattgtga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2767 agtcctatttcatagggttcaaattcaaatgtttggtatgatttttattcttaattgtga 2708
Query: 507 attaatttaatggtgatagaaggatatgttattcttcgttaataaaataatattaaataa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2707 attaatttaatggtgatagaaggatatgttattcttcgttaataaaataatattaaataa 2648
Query: 567 attcgattctctaacgtgtggtggttctcaaaatcacggcgaaaggacaagtttaggctt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2647 attcgattctctaacgtgtggtggttctcaaaatcacggcgaaaggacaagtttaggctt 2588
Query: 627 ccgaagaaagctcttgttttgcaatttcaacaaaacgcaaaaaaacccgcaacccattca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2587 ccgaagaaagctcttgttttgcaatttcaacaaaacgcaaaaaaacccgcaacccattca 2528
Query: 687 aaaagtttggaatagaaaagagtttgaacttttcctatattatgaaagtgagtatcgact 746
||||||| | ||||| ||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct: 2527 aaaagttggaaatag-aaagagtttgaacttctcctatatcatgaaggtgagtatcgact 2469
Query: 747 gggtgccttttttttggttcttgttgtttgtaagacattag-aatatactgatt--gaga 803
| ||| ||||||||| ||||||||||||||| ||| | ||| |||| ||||| | |||
Sbjct: 2468 gtgtgtctttttttt-gttcttgttgtttgt-agagaatagaaataaactgaatagaaga 2411
Query: 804 gaggga-aaaatgctttctatactgtagaagaaatcacaattatttggattgaacttgaa 862
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2410 gagggagaaaatgcattctatactgtagaagaaatcacaattatttggattgaacttgag 2351
Query: 863 aataaccaccccatgggtttaacatctttggacttcaaaatttcataaaacttttattgc 922
| ||||||||||||||| ||| ||| |||||||||||| ||||| | ||||| |||||
Sbjct: 2350 agtaaccaccccatggg-ttagcattcttggacttcaaatattcatcagactttaattgc 2292
Query: 923 cattcct 929
|||||||
Sbjct: 2291 cattcct 2285
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9705
Number of Sequences: 1807
Number of extensions: 9705
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)