BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZH04RM1.SCF screened BAC_end
         (926 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1364                                                        1302   0.0  

>3x_Contig1364 
          Length = 7464

 Score = 1302 bits (657), Expect = 0.0
 Identities = 711/725 (98%), Gaps = 3/725 (0%)
 Strand = Plus / Plus

                                                                       
Query: 90  acagaaaaacatacagaagatggtcatatgatagatgtcattgcgccacaatctcacttg 149
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   acagaaagacatacagaagatggtcatatgatagatgtcattgcgccacaatctcacttg 63

                                                                       
Query: 150 gctcttgttaagaagttcgtcgatttgacgagtacagaccaagagctaaacaataaactt 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  gctcttgttaagaagttcgtcgatttgacgagtacagaccaagagctaaacaataaactt 123

                                                                       
Query: 210 gacttttacagtgatactcttggaagcgtgttggtcgattcaattcatcatatgattgac 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gacttttacagtgatactcttggaagcgtgttggtcgattcaattcatcatatgattgac 183

                                                                       
Query: 270 aatgatatcctaactttaaatagcaataacaggttaaaaccgaaagcgttactatcctgt 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aatgatatcctaactttaaatagcaataacaggttaaaaccgaaagcgttactatcctgt 243

                                                                       
Query: 330 ttacaggagcataaaatcattacagaggactttcagatagcaaacgtaaaatgggacatc 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttacaggagcataaaatcattacagaggactttcagatagcaaacgtaaaatgggacatc 303

                                                                       
Query: 390 cttaacccagatgatgatgttgaattaaatgccaccagtttggataccttaaagactaat 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cttaacccagatgatgatgttgaattaaatgccaccagtttggataccttaaagactaat 363

                                                                       
Query: 450 ctattatcttttttgaacgatgagtccgatttaaagggaatcatcaatgataattctgat 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctattatcttttttgaacgatgagtccgatttaaagggaatcatcaatgataattctgat 423

                                                                       
Query: 510 gagagaaacgtgaatggtgatgcgcatgttgataatgaacaagaatcctttcttg-aaag 568
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 424 gagagaaacgtgaatggtgatgcgcatgttgataatgaacaagaatcctttcttgaaaag 483

                                                                       
Query: 569 gactctgatatttccatcgatgaagacgatttctttgaattctttctcaaaaatgggtta 628
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 484 gactctgatatttccatcgatgaagacgatttctttgaattcttcctcaaaaatgggtta 543

                                                                       
Query: 629 aacttagctgacgattacattgctaacttgcgtggaagttatatggacagcgatgctgat 688
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aacttagctgacgattacattgctaacttgcgtggaagttatatggacagcgatgctgat 603

                                                                       
Query: 689 aaagatcagattgcagatttctgagttagatacacttttttggacttcaccaatcattac 748
           ||||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||
Sbjct: 604 aaagatcagattgcaga-ttctgagttagatacac-tttctgaacttcaccaatcattac 661

                                                                       
Query: 749 aagatgtgtctgctgaatgcttttcaattgctgaccttgtcaaagtacttactgtaaatg 808
           ||||||||||||||||||||| | |||||||||||||||||||   ||| |||||| |||
Sbjct: 662 aagatgtgtctgctgaatgctctccaattgctgaccttgtcaagtcactcactgtagatg 721

                
Query: 809 gagct 813
           |||||
Sbjct: 722 gagct 726


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7394
Number of Sequences: 1807
Number of extensions: 7394
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)