BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZH05FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig343 979 0.0
>3x_Contig343
Length = 1398
Score = 979 bits (494), Expect = 0.0
Identities = 544/557 (97%), Gaps = 3/557 (0%)
Strand = Plus / Plus
Query: 372 ttggcaaacatatattgtcaataaattatcctggcgtttctaac-ttatacataaatcta 430
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ttggcaaacatatattgtcaataaattatcctggcgtttctaaccttatacataaatcta 60
Query: 431 gcgattcacaattcattatatagaatttatgatttgaataaaaacgttacctttcttgaa 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgattcacaattcattatatagaatttatgatttgaataaaaacgttacctttcttgaa 120
Query: 491 tccgattttccagagaataccaacactatgttcaagtactcatcctaaccgagcaggtag 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccgattttccagagaataccaacactatgttcaagtactcatcctaaccgagcaggtag 180
Query: 551 tagtgaagatctacatactttcatcagcgttcatttttgtattcaggatatcggtttctt 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagtgaagatctacatactttcatcagcgttcatttttgtattcaggatatcggtttctt 240
Query: 611 gtgtttcctgcatgatccatttccatatattttcgaaacaaaggattatttgtataaaga 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgtttcctgcatgatccatttccatatattttcgaaacaaaggattatttgtataaaga 300
Query: 671 aaggaacttggcacgaatcctatacgattaaacaaaaacgacaacaaattacaatgacca 730
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaggaacttggcacgaatcctaaacgattaaacaaaaacgacaacaaattacaatgacca 360
Query: 731 ctggccgatcgtgccgnctggaaatcatcatttttacaaggaaaacggcgaaatcaatat 790
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctggccgatcgtgccgcctggaaatcatcatttttacaaggaaaacggcgaaatcaatat 420
Query: 791 catagtactagacagttgtctctgcaagaatgaatgggacaacaaaccttcg-agataat 849
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 421 catagtactagacagttgtctctgcaagaagaaatgggacaacaaaccttcgaagataat 480
Query: 850 gaagagatttattattcgtcatatctttgtaaaaaaaccaacgttttcgaagtctatttc 909
||||||||| |||||||||||||| ||||||||||||| || | ||||||||||||||
Sbjct: 481 gaagagattatttattcgtcatatc-ttgtaaaaaaacccaccgtctcgaagtctatttc 539
Query: 910 atccacgaaacaattgg 926
|||||||||||||||||
Sbjct: 540 atccacgaaacaattgg 556
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7269
Number of Sequences: 1807
Number of extensions: 7269
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)