BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZH05RM1.SCF screened BAC_end
         (940 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig945                                                          997   0.0  

>3x_Contig945 
          Length = 3379

 Score =  997 bits (503), Expect = 0.0
 Identities = 567/583 (97%), Gaps = 4/583 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   cttaatcttgccacttctttggttaccttttctttcttttcaagttctgttagtggtcta 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2355 cttaatcttgccacttctttggttaccttttctttcttttcaagttctgttagtggtcta 2296

                                                                        
Query: 108  attctatagcccggaattatgcttttaaaaacggtgaccaatgctaatatcgagaacttg 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2295 attctatagcccggaattatgcttttaaaaacggtgaccaatgctaatatcgagaacttg 2236

                                                                        
Query: 168  gcagtattcggatttttagagcctgccattttacgtagacgtgtcaatgctgtcgtattt 227
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2235 gcagtattcggatttttagagcctgccattttacgtagacgtgtcaatgctgccgtattt 2176

                                                                        
Query: 228  tcttcggcttcttccataattctttcaactaattctgcaattgtctcttttaattctata 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2175 tcttcggcttcttccataattctttcaactaattctgcaattgtctcttttaattctata 2116

                                                                        
Query: 288  attgtttcttcagtgtctggtacctcgttatcatcttcttcctctcctgacgacgcagct 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2115 attgtttcttcagtgtctggtacctcgttatcatcttcttcctctcctgacgacgcagct 2056

                                                                        
Query: 348  ccatccttcgaattttcctcctcgtcatttgattcattgtctgcttcatcttccttagat 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2055 ccatccttcgaattttcctcctcgtcatttgattcattgtctgcttcatcttccttagat 1996

                                                                        
Query: 408  ttccggacgtcattcctttgagatttgatgatattcctttccactttaccatttctcttg 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1995 ttccggacgtcattcctttgagatttgatgatattcctttccactttaccatttctcttg 1936

                                                                        
Query: 468  ataggtaaaccttctacggcgtctttattatcttgacctttgagagttctaggtttaagt 527
            ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 1935 ataggtaaaccttctacggcgtcttcatcatcttgacctttgagagttctaggtttaagt 1876

                                                                        
Query: 528  tcg-aaacttgctcattgtcattccaggagggattttgaaagcattctttcggttacttt 586
            ||| || ||||||||| ||||| |||||| |||||||||| ||||||| |||  ||||| 
Sbjct: 1875 tcgtaatcttgctcatcgtcatcccagga-ggattttgaaggcattctatcgtctacttc 1817

                                                       
Query: 587  aacatcctcagtctgggaacaagccagtcttaaagaagggcat 629
            |||||||||||||| |||||||||||||| | |||||||||||
Sbjct: 1816 aacatcctcagtct-ggaacaagccagtc-tcaagaagggcat 1776


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,112
Number of Sequences: 1807
Number of extensions: 21112
Number of successful extensions: 2590
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)